blob: 0e7deda7d172f7d81a43f620ee3be91a81cb46ef (
plain)
Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice
junctions with RNA-Seq. Bioinformatics doi:10.1093/bioinformatics/btp120
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-
efficient alignment of short DNA sequences to the human genome. Genome
Biology 10:R25.
Kim D and Salzberg SL. TopHat-Fusion: an algorithm for discovery of
novel fusion transcripts. Genome Biology 2011, 12:R72
Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL.
TopHat2: accurate alignment of transcriptomes in the presence of
insertions, deletions and gene fusions. . Genome Biology 2011, 14:R36
|