1 files changed, 65 insertions, 22 deletions
diff --git a/academic/trfind/trfind.SlackBuild b/academic/trfind/trfind.SlackBuild
index 76783294e3..245927edac 100644
--- a/academic/trfind/trfind.SlackBuild
+++ b/academic/trfind/trfind.SlackBuild
@@ -1,8 +1,8 @@
-#!/bin/sh
+#!/bin/bash
 
 # Slackware build script for trfind
 
-# Copyright 2018 Petar Petrov slackalaxy@gmail.com
+# Copyright 2018-2021 Petar Petrov slackalaxy@gmail.com
 # All rights reserved.
 #
 # Redistribution and use of this script, with or without modification, is
@@ -22,54 +22,97 @@
 #  OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
 #  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
+cd $(dirname $0) ; CWD=$(pwd)
+
 PRGNAM=trfind
-VERSION=${VERSION:-4.09}
-BUILD=${BUILD:-2}
+VERSION=${VERSION:-4.09.1}
+BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
+PKGTYPE=${PKGTYPE:-tgz}
 
-SRCNAM=trf
-BINVER=409
+SRCNAM=TRF
 
 if [ -z "$ARCH" ]; then
   case "$( uname -m )" in
-    i?86) ARCH=i386 ;;
+    i?86) ARCH=i586 ;;
     arm*) ARCH=arm ;;
        *) ARCH=$( uname -m ) ;;
   esac
 fi
 
-CWD=$(pwd)
+# If the variable PRINT_PACKAGE_NAME is set, then this script will report what
+# the name of the created package would be, and then exit. This information
+# could be useful to other scripts.
+if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then
+  echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE"
+  exit 0
+fi
+
 TMP=${TMP:-/tmp/SBo}
 PKG=$TMP/package-$PRGNAM
 OUTPUT=${OUTPUT:-/tmp}
 
-set -e
-
-if [ "$ARCH" != "i386" ] && [ "$ARCH" != "x86_64" ]; then
-  printf "\n\n$ARCH is not supported... \n"
-  exit 1
-fi
-
-# Determine binary architecture
-if [ "$ARCH" = "x86_64" ]; then
-  BINARCH="linux64"
+if [ "$ARCH" = "i586" ]; then
+  SLKCFLAGS="-O2 -march=i586 -mtune=i686"
+  LIBDIRSUFFIX=""
+elif [ "$ARCH" = "i686" ]; then
+  SLKCFLAGS="-O2 -march=i686 -mtune=i686"
+  LIBDIRSUFFIX=""
+elif [ "$ARCH" = "x86_64" ]; then
+  SLKCFLAGS="-O2 -fPIC"
+  LIBDIRSUFFIX="64"
 else
-  BINARCH="linux32"
+  SLKCFLAGS="-O2"
+  LIBDIRSUFFIX=""
 fi
 
+set -e
+
 rm -rf $PKG
 mkdir -p $TMP $PKG $OUTPUT
 cd $TMP
+rm -rf $SRCNAM-$VERSION
+tar xvf $CWD/$SRCNAM-$VERSION.tar.gz
+cd $SRCNAM-$VERSION
+chown -R root:root .
+find -L . \
+ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
+  -o -perm 511 \) -exec chmod 755 {} \; -o \
+ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
+  -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
+
+CFLAGS="$SLKCFLAGS" \
+./configure \
+  --prefix=/usr \
+  --libdir=/usr/lib${LIBDIRSUFFIX} \
+  --sysconfdir=/etc \
+  --localstatedir=/var \
+  --mandir=/usr/man \
+  --docdir=/usr/doc/$PRGNAM-$VERSION \
+  --build=$ARCH-slackware-linux
+
+make
+
+# "make install" works, but it is simpler this way
+install -D -m755 src/trf $PKG/usr/bin/trf
+
+find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
+  | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
 
-install -D -m755 $CWD/${SRCNAM}${BINVER}.${BINARCH} $PKG/usr/bin/$SRCNAM
+# Include FASTA examples, but let's compress the file first
+mkdir -p $PKG/usr/share/$PRGNAM
+gzip test_seqs.fasta
+cp test_seqs.fasta.gz $PKG/usr/share/$PRGNAM
 
 mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
+cp -a \
+  README.md COPYING INSTALL history.txt \
+  $PKG/usr/doc/$PRGNAM-$VERSION
 cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
 cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
-cat $CWD/LICENSE > $PKG/usr/doc/$PRGNAM-$VERSION/LICENSE
 
 mkdir -p $PKG/install
 cat $CWD/slack-desc > $PKG/install/slack-desc
 
 cd $PKG
-/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
+/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE