diff options
Diffstat (limited to 'academic/pyCRAC/MANIFEST_slack.txt')
| -rw-r--r-- | academic/pyCRAC/MANIFEST_slack.txt | 69 |
1 files changed, 69 insertions, 0 deletions
diff --git a/academic/pyCRAC/MANIFEST_slack.txt b/academic/pyCRAC/MANIFEST_slack.txt new file mode 100644 index 0000000000..95a4931773 --- /dev/null +++ b/academic/pyCRAC/MANIFEST_slack.txt @@ -0,0 +1,69 @@ +setup.py +MANIFEST.txt +LICENCE.txt +README.txt +pyCRAC/tests/test.novo +pyCRAC/tests/test.sh +pyCRAC/tests/test_coordinates.txt +pyCRAC/tests/test.gtf +pyCRAC/tests/test_f.fastq +pyCRAC/tests/test_f.fastq.gz +pyCRAC/tests/test_f_dm.fastq +pyCRAC/tests/test_r.fastq +pyCRAC/tests/test_r.fastq.gz +pyCRAC/tests/test_r_dm.fastq +pyCRAC/tests/indexes.txt +pyCRAC/tests/barcodes.txt +pyCRAC/tests/genes.lis +pyCRAC/Classes/NGSFormatWriters.py +pyCRAC/Classes/NGSFormatReaders.py +pyCRAC/Classes/PairedReads.py +pyCRAC/Classes/Pileups.py +pyCRAC/Classes/Aligner.py +pyCRAC/Classes/Motifs.py +pyCRAC/Classes/Barcodes.py +pyCRAC/Classes/Coverage.py +pyCRAC/Classes/Exceptions.py +pyCRAC/Classes/FDR.py +pyCRAC/Classes/Clustering +pyCRAC/db/Saccharomyces_cerevisiae.EF2.59.1.0_chr_lengths.txt +pyCRAC/db/Saccharomyces_cerevisiae.EF2.59.1.0.fa +pyCRAC/db/Saccharomyces_cerevisiae.EF2.59.1.0.fa.tab +pyCRAC/db/Saccharomyces_cerevisiae.EF2.59.1.3.gtf +pyCRAC/kinetic_crac_pipeline/CRAC_pipeline_PE.py +pyCRAC/kinetic_crac_pipeline/CRAC_pipeline_PeakFinder.py +pyCRAC/kinetic_crac_pipeline/CRAC_pipeline_SE.py +pyCRAC/kinetic_crac_pipeline/TrimNucs.py +pyCRAC/scripts/pybed2GTF.py +pyCRAC/scripts/pyGTF2bed.py +pyCRaC/scripts/pyGTF2bedGraph.py +pyCRAC/scripts/pyGTF2sgr.py +pyCRAC/scripts/pyNormalizeIntervalLengths.py +pyCRAC/scripts/pyFastqDuplicateRemover.py +pyCRAC/scripts/pyFastqJoiner.py +pyCRAC/scripts/pyFastqSplitter.py +pyCRAC/scripts/pyGetGeneNamesFromGTF.py +pyCRAC/scripts/pySelectMotifsFromGTF.py +pyCRAC/scripts/pyGetGTFSources.py +pyCRAC/scripts/pyFilterGTF.py +pyCRAC/scripts/pyFasta2tab.py +pyCRAC/scripts/pyAlignment2Tab.py +pyCRAC/scripts/pyExtractLinesFromGTF.py +pyCRAC/scripts/pyCheckGTFfile.py +pyCRAC/scripts/pyCalculateChromosomeLengths.py +pyCRAC/pyClusterReads.py +pyCRAC/pyCalculateFDRs.py +pyCRAC/pyCalculateMutationFrequencies.py +pyCRAC/pyBinCollector.py +pyCRAC/pyMotif.py +pyCRAC/pyPileup.py +pyCRAC/pyReadAligner.py +pyCRAC/pyReadCounters.py +pyCRAC/pyBarcodeFilter.py +pyCRAC/Parsers/Blast.py +pyCRAC/Parsers/GTF2.py +pyCRAC/Parsers/Novoalign.py +pyCRAC/Parsers/ParseAlignments.py +pyCRAC/Parsers/SAM.py +pyCRAC/Parsers/fasta2dict.py +pyCRAC/Parsers/tab2dict.py |