diff options
Diffstat (limited to 'academic/clustalx/QT.patch')
| -rw-r--r-- | academic/clustalx/QT.patch | 200 |
1 files changed, 200 insertions, 0 deletions
diff --git a/academic/clustalx/QT.patch b/academic/clustalx/QT.patch new file mode 100644 index 0000000000..72907ea824 --- /dev/null +++ b/academic/clustalx/QT.patch @@ -0,0 +1,200 @@ +diff -urN clustalx-2.1/AlignOutputFileNames.cpp clustalx-2.1-bak/AlignOutputFileNames.cpp +--- clustalx-2.1/AlignOutputFileNames.cpp 2010-11-17 11:12:30.000000000 +0100 ++++ clustalx-2.1-bak/AlignOutputFileNames.cpp 2015-09-18 18:59:38.582405761 +0200 +@@ -13,6 +13,7 @@ + * 18-06-07,Nigel Brown(EMBL): Made the 'ok' button in each dialogue be the + * default instead of a Browse button. + */ ++#include <QtGui> + #include <QPushButton> + #include <QGroupBox> + #include <QCheckBox> +@@ -20,8 +21,8 @@ + #include <QGridLayout> + #include <QSizePolicy> + #include <QComboBox> +-#include <QtGui> + #include <QLabel> ++#include <QLineEdit> + #include <iostream> + #include "AlignOutputFileNames.h" + #include "clustalW/general/userparams.h" +diff -urN clustalx-2.1/AlignmentViewerWidget.cpp clustalx-2.1-bak/AlignmentViewerWidget.cpp +--- clustalx-2.1/AlignmentViewerWidget.cpp 2010-11-17 11:12:30.000000000 +0100 ++++ clustalx-2.1-bak/AlignmentViewerWidget.cpp 2015-09-18 18:50:09.762563103 +0200 +@@ -69,6 +69,11 @@ + #include "PSPrinter.h" + #include "FileDialog.h" + #include <QFontMetrics> ++#include <QVBoxLayout> ++#include <QScrollBar> ++#include <QScrollArea> ++#include <QMessageBox> ++#include <QGroupBox> + + AlignmentViewerWidget::AlignmentViewerWidget(QWidget *parent) + : QWidget(parent), +diff -urN clustalx-2.1/AlignmentWidget.cpp clustalx-2.1-bak/AlignmentWidget.cpp +--- clustalx-2.1/AlignmentWidget.cpp 2010-11-17 11:12:30.000000000 +0100 ++++ clustalx-2.1-bak/AlignmentWidget.cpp 2015-09-18 18:58:36.656119118 +0200 +@@ -46,6 +46,7 @@ + ****************************************************************************/ + + #include <QtGui> ++#include <QScrollArea> + #include "AlignmentWidget.h" + #include "clustalW/general/userparams.h" + #include "ClustalQtParams.h" +diff -urN clustalx-2.1/BootstrapTreeDialog.cpp clustalx-2.1-bak/BootstrapTreeDialog.cpp +--- clustalx-2.1/BootstrapTreeDialog.cpp 2010-11-17 11:12:30.000000000 +0100 ++++ clustalx-2.1-bak/BootstrapTreeDialog.cpp 2015-09-18 19:00:09.782214298 +0200 +@@ -5,6 +5,7 @@ + * 12-4-07, Mark Larkin, Removed destructor. No need to delete QObjects. Also removed + * setAllPtrsToNull function. + */ ++#include <QtGui> + #include <QPushButton> + #include <QGroupBox> + #include <QCheckBox> +@@ -12,8 +13,8 @@ + #include <QGridLayout> + #include <QSizePolicy> + #include <QComboBox> +-#include <QtGui> + #include <QLabel> ++#include <QLineEdit> + #include <iostream> + #include "BootstrapTreeDialog.h" + #include "clustalW/general/userparams.h" +diff -urN clustalx-2.1/ColorFileXmlParser.cpp clustalx-2.1-bak/ColorFileXmlParser.cpp +--- clustalx-2.1/ColorFileXmlParser.cpp 2010-11-17 11:12:30.000000000 +0100 ++++ clustalx-2.1-bak/ColorFileXmlParser.cpp 2015-09-18 19:00:42.695345653 +0200 +@@ -1,4 +1,5 @@ + #include <QtGui> ++#include <QMessageBox> + + #include "ColorFileXmlParser.h" + #include "ClustalQtParams.h" +@@ -202,4 +203,4 @@ + rule = rule.nextSiblingElement("resrule"); + } + return numOfRules; +-} +\ No newline at end of file ++} +diff -urN clustalx-2.1/HelpDisplayWidget.cpp clustalx-2.1-bak/HelpDisplayWidget.cpp +--- clustalx-2.1/HelpDisplayWidget.cpp 2010-11-17 11:12:30.000000000 +0100 ++++ clustalx-2.1-bak/HelpDisplayWidget.cpp 2015-09-18 19:34:51.692771579 +0200 +@@ -16,6 +16,8 @@ + #include <QTextEdit> + #include <iostream> + #include <fstream> ++#include <QPushButton> ++#include <QVBoxLayout> + #include <QtGui> + #include "Resources.h" + +diff -urN clustalx-2.1/PSPrinter.cpp clustalx-2.1-bak/PSPrinter.cpp +--- clustalx-2.1/PSPrinter.cpp 2010-11-17 11:12:30.000000000 +0100 ++++ clustalx-2.1-bak/PSPrinter.cpp 2015-09-18 19:20:36.528019466 +0200 +@@ -17,6 +17,7 @@ + #include <iomanip> + #include <sstream> + #include <QtGui> ++#include <QMessageBox> + #include "PSPrinter.h" + #include "ColorFileXmlParser.h" + #include "clustalW/general/userparams.h" +diff -urN clustalx-2.1/ProteinGapParameters.cpp clustalx-2.1-bak/ProteinGapParameters.cpp +--- clustalx-2.1/ProteinGapParameters.cpp 2010-11-17 11:12:30.000000000 +0100 ++++ clustalx-2.1-bak/ProteinGapParameters.cpp 2015-09-18 19:20:07.311532091 +0200 +@@ -9,6 +9,7 @@ + #include <QLabel> + #include <QString> + #include <QMessageBox> ++#include <QLineEdit> + #include "ProteinGapParameters.h" + #include "clustalW/general/userparams.h" + +diff -urN clustalx-2.1/SaveSeqFile.cpp clustalx-2.1-bak/SaveSeqFile.cpp +--- clustalx-2.1/SaveSeqFile.cpp 2010-11-17 11:12:30.000000000 +0100 ++++ clustalx-2.1-bak/SaveSeqFile.cpp 2015-09-18 19:21:28.231035513 +0200 +@@ -20,6 +20,8 @@ + #include <QComboBox> + #include <QtGui> + #include <QLabel> ++#include <QMessageBox> ++#include <QLineEdit> + #include "SaveSeqFile.h" + #include "clustalW/general/userparams.h" + #include "clustalW/general/utils.h" +diff -urN clustalx-2.1/SeqNameWidget.cpp clustalx-2.1-bak/SeqNameWidget.cpp +--- clustalx-2.1/SeqNameWidget.cpp 2010-11-17 11:12:30.000000000 +0100 ++++ clustalx-2.1-bak/SeqNameWidget.cpp 2015-09-18 19:22:48.903873782 +0200 +@@ -56,6 +56,7 @@ + ****************************************************************************/ + + #include <QtGui> ++#include <QScrollArea> + #include "SeqNameWidget.h" + #include "KeyController.h" //- nige + #include "clustalW/alignment/Alignment.h" +diff -urN clustalx-2.1/TreeOutputFileNames.cpp clustalx-2.1-bak/TreeOutputFileNames.cpp +--- clustalx-2.1/TreeOutputFileNames.cpp 2010-11-17 11:12:30.000000000 +0100 ++++ clustalx-2.1-bak/TreeOutputFileNames.cpp 2015-09-18 19:23:37.006911921 +0200 +@@ -13,6 +13,7 @@ + #include <QComboBox> + #include <QtGui> + #include <QLabel> ++#include <QLineEdit> + #include <iostream> + #include "TreeOutputFileNames.h" + #include "clustalW/general/userparams.h" +diff -urN clustalx-2.1/WritePostscriptFile.cpp clustalx-2.1-bak/WritePostscriptFile.cpp +--- clustalx-2.1/WritePostscriptFile.cpp 2010-11-17 11:12:30.000000000 +0100 ++++ clustalx-2.1-bak/WritePostscriptFile.cpp 2015-09-18 19:24:30.429917414 +0200 +@@ -20,6 +20,8 @@ + #include <QComboBox> + #include <QtGui> + #include <QLabel> ++#include <QLineEdit> ++#include <QMessageBox> + #include <iostream> + #include "WritePostscriptFile.h" + #include "clustalW/general/userparams.h" +Binary files clustalx-2.1/clustalx and clustalx-2.1-bak/clustalx differ +diff -urN clustalx-2.1/clustalx.pro clustalx-2.1-bak/clustalx.pro +--- clustalx-2.1/clustalx.pro 2010-11-17 11:12:30.000000000 +0100 ++++ clustalx-2.1-bak/clustalx.pro 2015-09-18 19:14:42.666857671 +0200 +@@ -4,8 +4,11 @@ + + TEMPLATE = app + TARGET = clustalx +-CONFIG += release static ++CONFIG += release + QT += xml ++QT += widgets ++DEFINES += QT_DISABLE_DEPRECATED_BEFORE=0x000000 ++ + VERSION = 2.1 + win32 { + DEFINES += OS_WINDOWS +diff -urN clustalx-2.1/mainwindow.cpp clustalx-2.1-bak/mainwindow.cpp +--- clustalx-2.1/mainwindow.cpp 2010-11-17 11:12:30.000000000 +0100 ++++ clustalx-2.1-bak/mainwindow.cpp 2015-09-18 19:19:03.545256739 +0200 +@@ -94,6 +94,15 @@ + #include <cstdlib> + #include <QCheckBox> + #include <QStringList> ++#include <QMenu> ++#include <QMenuBar> ++#include <QAction> ++#include <QMessageBox> ++#include <QApplication> ++#include <QScrollBar> ++#include <QHBoxLayout> ++#include <QGroupBox> ++#include <QVBoxLayout> + #include "SecStructOptions.h" + #include "mainwindow.h" + #include "WritePostscriptFile.h" |