diff options
Diffstat (limited to 'academic/bowtie2')
| -rw-r--r-- | academic/bowtie2/bowtie2.SlackBuild | 19 | ||||
| -rw-r--r-- | academic/bowtie2/bowtie2.info | 10 |
2 files changed, 10 insertions, 19 deletions
diff --git a/academic/bowtie2/bowtie2.SlackBuild b/academic/bowtie2/bowtie2.SlackBuild index f659668de5..37f440626e 100644 --- a/academic/bowtie2/bowtie2.SlackBuild +++ b/academic/bowtie2/bowtie2.SlackBuild @@ -3,7 +3,7 @@ # Slackware build script for bowtie2 # Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com -# Copyright 2018-2021 Rob van Nues sborg63@disroot.org +# Copyright 2018-2024 Rob van Nues sborg63@disroot.org # # All rights reserved. # @@ -27,7 +27,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=bowtie2 -VERSION=${VERSION:-2.4.4} +VERSION=${VERSION:-2.5.3} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -40,9 +40,6 @@ if [ -z "$ARCH" ]; then esac fi -# If the variable PRINT_PACKAGE_NAME is set, then this script will report what -# the name of the created package would be, and then exit. This information -# could be useful to other scripts. if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE" exit 0 @@ -52,18 +49,12 @@ TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM OUTPUT=${OUTPUT:-/tmp} -if [ "$ARCH" = "i586" ]; then - SLKCFLAGS="-O2 -march=i586 -mtune=i686" - LIBDIRSUFFIX="" -elif [ "$ARCH" = "i686" ]; then - SLKCFLAGS="-O2 -march=i686 -mtune=i686" - LIBDIRSUFFIX="" -elif [ "$ARCH" = "x86_64" ]; then +if [ "$ARCH" = "x86_64" ]; then SLKCFLAGS="-O2 -fPIC" LIBDIRSUFFIX="64" else - SLKCFLAGS="-O2" - LIBDIRSUFFIX="" + printf "\n$ARCH is unsupported by $PRGNAM\n" + exit 1 fi set -e diff --git a/academic/bowtie2/bowtie2.info b/academic/bowtie2/bowtie2.info index 1fd73195b3..6942bdcfcd 100644 --- a/academic/bowtie2/bowtie2.info +++ b/academic/bowtie2/bowtie2.info @@ -1,10 +1,10 @@ PRGNAM="bowtie2" -VERSION="2.4.4" +VERSION="2.5.3" HOMEPAGE="https://github.com/BenLangmead/bowtie2/releases" -DOWNLOAD="https://github.com/BenLangmead/bowtie2/archive/v2.4.4/bowtie2-2.4.4.tar.gz" -MD5SUM="b9da62b01d904149ffc6f5caad7fd1b1" -DOWNLOAD_x86_64="" -MD5SUM_x86_64="" +DOWNLOAD="UNSUPPORTED" +MD5SUM="" +DOWNLOAD_x86_64="https://github.com/BenLangmead/bowtie2/archive/v2.5.3/bowtie2-2.5.3.tar.gz" +MD5SUM_x86_64="c9bb6edaf47c4487efd4b2a055912182" REQUIRES="tbb" MAINTAINER="Rob van Nues" EMAIL="sborg63@disroot.org" |