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author Petar Petrov2018-07-08 20:40:22 +0200
committer David Spencer2018-07-08 20:40:22 +0200
commit5c821121ece759ad907abbdf81c640c805eb197d (patch)
tree6577c355b892a347eaa136a878844505e37dc256 /academic/perlprimer/README
parentcb07f25ef0cebcbb1587cdbe41c496b2c4f2d4b1 (diff)
downloadslackbuilds-5c821121ece759ad907abbdf81c640c805eb197d.tar.gz
academic/perlprimer: Updated for version 1.2.3_f7d3bd0.
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
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-PerlPrimer is a free, open-source GUI application written in Perl
-that designs primers for standard PCR, bisulphite PCR, real-time PCR
-(QPCR) and sequencing. It aims to automate and simplify the process
-of primer design.
+PerlPrimer is a free, open-source GUI application written in Perl
+that designs primers for standard PCR, bisulphite PCR, real-time PCR
+(QPCR) and sequencing. It aims to automate and simplify the process
+of primer design.
PerlPrimer's current features include the following:
- Calculation of possible primer-dimers
-- Retrieval of genomic or cDNA sequences from Ensembl (including both
+- Retrieval of genomic or cDNA sequences from Ensembl (including both
sequences automatically for QPCR)
-- Ability to BLAST search primers using the NCBI server or a local
+- Ability to BLAST search primers using the NCBI server or a local
server
-- Results can be saved or optionally exported in a tab-delimited
+- Results can be saved or optionally exported in a tab-delimited
format that is compatible with most spreadsheet applications.
- ORF and CpG island detection algorithms
-- Ability to add cloning sequences to primers, automatically adjusted
+- Ability to add cloning sequences to primers, automatically adjusted
to be in-frame
-- QPCR primer design without manual intron-exon boundary entry
+- QPCR primer design without manual intron-exon boundary entry
An optional run-time dependency is spidey, for Real Time PCR.