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| author |   brobr | 2023-09-29 15:15:28 +0200 |
|---|---|---|
| committer |   Willy Sudiarto Raharjo | 2023-10-07 10:58:38 +0200 |
| commit | 47954aace3cbb3bc6bf0d714c5b4360ba031fd83 (patch) | |
| tree | 05243286b30922ec20c936d68e99350fd8604523 /academic/ViennaRNA/README | |
| parent | 204e494bd38672ea51dd3365b8b8ba9f44411106 (diff) | |
| download | slackbuilds-47954aace3cbb3bc6bf0d714c5b4360ba031fd83.tar.gz | |
academic/ViennaRNA: Update script.
Enable RNAxplorer, needs setting which blas is used to compile
lapack(e), see README and ViennaRNA.SlackBuild
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/ViennaRNA/README')
| -rw-r--r-- | academic/ViennaRNA/README | 13 |
1 files changed, 11 insertions, 2 deletions
diff --git a/academic/ViennaRNA/README b/academic/ViennaRNA/README index a82c7160b2..69c7211233 100644 --- a/academic/ViennaRNA/README +++ b/academic/ViennaRNA/README @@ -3,6 +3,15 @@ A C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures. +A recent addition, RNAxplorer, requires lapacke (which requires +lapack that depends on a version of blas). During configuration the +step for RNAxplorer stalls (on missing lapack) because it does not +find the version of blas that has been used for compiling lapack +(see https://github.com/ViennaRNA/ViennaRNA/issues/206). +An extra variable ($BLAS) in the SlackBuild sets openblas as the +version of blas used for lapack(e). Please, adjust $BLAS to the blas +used on your system. + A tutorial (see /usr/doc/$PRGNAM-$VERSION/RNA-tutorial-$VERSION.pdf) and examples can be found in /usr/share/$PRGNAM/tutorial and /usr/share/$PRGNAM/examples @@ -27,7 +36,7 @@ Amongst other things, the ViennRNA implementations allow you to: alignment - predict melting curves - search for sequences folding into a given structure -- compare two secondary structures +- compare two secondary structures - predict hybridization structures of two RNA molecules The package includes `Perl 5` and `Python 3` modules that give access @@ -49,6 +58,6 @@ The code very rarely uses static arrays, and all programs should work for sequences up to a length of 32,700 (if you have huge amounts of memory that is). -For further info see: +For further/most recent info see: https://www.tbi.univie.ac.at/RNA/documentation.html |