diff --git a/src/plugins_3rdparty/hmm3/src/hmmer3/hmmer3_funcs.cpp b/src/plugins_3rdparty/hmm3/src/hmmer3/hmmer3_funcs.cpp index b458c12..23fa49b 100644 --- a/src/plugins_3rdparty/hmm3/src/hmmer3/hmmer3_funcs.cpp +++ b/src/plugins_3rdparty/hmm3/src/hmmer3/hmmer3_funcs.cpp @@ -33,7 +33,7 @@ float infinity() { } bool isfin( float x ) { - return !isnan( x ) && !isinf( x ); + return !std::isnan( x ) && !std::isinf( x ); } const char TERM_SYM = '\0'; diff --git a/src/plugins_3rdparty/hmm3/src/hmmer3/impl_sse/decoding.cpp b/src/plugins_3rdparty/hmm3/src/hmmer3/impl_sse/decoding.cpp index 9050f1c..6032970 100644 --- a/src/plugins_3rdparty/hmm3/src/hmmer3/impl_sse/decoding.cpp +++ b/src/plugins_3rdparty/hmm3/src/hmmer3/impl_sse/decoding.cpp @@ -134,7 +134,7 @@ p7_Decoding(const P7_OPROFILE *om, const P7_OMX *oxf, P7_OMX *oxb, P7_OMX *pp) if (oxb->has_own_scales) scaleproduct *= oxf->xmx[i*p7X_NXCELLS+p7X_SCALE] / oxb->xmx[i*p7X_NXCELLS+p7X_SCALE]; } - if (isinf(scaleproduct)) return eslERANGE; + if (std::isinf(scaleproduct)) return eslERANGE; else return eslOK; } @@ -188,7 +188,7 @@ p7_DomainDecoding(const P7_OPROFILE *om, const P7_OMX *oxf, const P7_OMX *oxb, P } ddef->L = oxf->L; - if (isinf(scaleproduct)) return eslERANGE; + if (std::isinf(scaleproduct)) return eslERANGE; else return eslOK; } /*------------------ end, posterior decoding --------------------*/ diff --git a/src/plugins_3rdparty/hmm3/src/hmmer3/impl_sse/fwdback.cpp b/src/plugins_3rdparty/hmm3/src/hmmer3/impl_sse/fwdback.cpp index 5bafaa4..413a6fe 100644 --- a/src/plugins_3rdparty/hmm3/src/hmmer3/impl_sse/fwdback.cpp +++ b/src/plugins_3rdparty/hmm3/src/hmmer3/impl_sse/fwdback.cpp @@ -465,9 +465,9 @@ forward_engine(int do_full, const ESL_DSQ *dsq, int L, const P7_OPROFILE *om, P7 /* On an underflow (which shouldn't happen), we counterintuitively return infinity: * the effect of this is to force the caller to rescore us with full range. */ - if (isnan(xC)) ESL_EXCEPTION(eslERANGE, "forward score is NaN"); + if (std::isnan(xC)) ESL_EXCEPTION(eslERANGE, "forward score is NaN"); else if (L>0 && xC == 0.0) ESL_EXCEPTION(eslERANGE, "forward score underflow (is 0.0)"); - else if (isinf(xC) == 1) ESL_EXCEPTION(eslERANGE, "forward score overflow (is infinity)"); + else if (std::isinf(xC) == 1) ESL_EXCEPTION(eslERANGE, "forward score overflow (is infinity)"); if (opt_sc != NULL) *opt_sc = ox->totscale + log((double)(xC * om->xf[p7O_C][p7O_MOVE])); return eslOK; @@ -742,9 +742,9 @@ backward_engine(int do_full, const ESL_DSQ *dsq, int L, const P7_OPROFILE *om, c if (bck->debugging) p7_omx_DumpFBRow(bck, TRUE, 0, 9, 4, bck->xmx[p7X_E], bck->xmx[p7X_N], bck->xmx[p7X_J], bck->xmx[p7X_B], bck->xmx[p7X_C]); /* logify=TRUE, =0, width=9, precision=4*/ #endif - if (isnan(xN)) ESL_EXCEPTION(eslERANGE, "backward score is NaN"); + if (std::isnan(xN)) ESL_EXCEPTION(eslERANGE, "backward score is NaN"); else if (L>0 && xN == 0.0) ESL_EXCEPTION(eslERANGE, "backward score underflow (is 0.0)"); - else if (isinf(xN) == 1) ESL_EXCEPTION(eslERANGE, "backward score overflow (is infinity)"); + else if (std::isinf(xN) == 1) ESL_EXCEPTION(eslERANGE, "backward score overflow (is infinity)"); if (opt_sc != NULL) *opt_sc = bck->totscale + log((double)xN); return eslOK;