From 1861748c093979a87b9916053d24921893af754d Mon Sep 17 00:00:00 2001
From: Petar Petrov
Date: Sun, 17 Jun 2018 22:41:54 +0100
Subject: academic/PhyML: Updated for version 3.3.20180214.

Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
---
 academic/PhyML/PhyML.SlackBuild | 10 ++++------
 academic/PhyML/PhyML.info       |  6 +++---
 2 files changed, 7 insertions(+), 9 deletions(-)

(limited to 'academic/PhyML')

diff --git a/academic/PhyML/PhyML.SlackBuild b/academic/PhyML/PhyML.SlackBuild
index d82f9370f5..1aa61b75ae 100644
--- a/academic/PhyML/PhyML.SlackBuild
+++ b/academic/PhyML/PhyML.SlackBuild
@@ -2,7 +2,7 @@
 
 # Slackware build script for PhyML
 
-# Copyright 2011-2017 Petar Petrov slackalaxy@gmail.com
+# Copyright 2011-2018 Petar Petrov slackalaxy@gmail.com
 # All rights reserved.
 #
 # Redistribution and use of this script, with or without modification, is
@@ -26,7 +26,7 @@
 
 PRGNAM=PhyML
 SRCNAM=$(echo $PRGNAM | tr A-Z a-z)
-VERSION=${VERSION:-3.3.20170530}
+VERSION=${VERSION:-3.3.20180214}
 BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
 
@@ -163,13 +163,11 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr
 
 # Include some examples
 mkdir -p $PKG/usr/share/$PRGNAM
-cp -a \
-  examples/{lg4x,phyrex_input_files,nexus_example.nxs,nucleic,proteic} \
-  $PKG/usr/share/$PRGNAM
+cp -a examples $PKG/usr/share/$PRGNAM
 
 mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
 cp -a \
-  doc/$SRCNAM-manual.pdf AUTHORS ChangeLog COPYING LICENSE README \
+  doc/{$SRCNAM-manual.pdf,ref.bib,$SRCNAM-manual.tex,fig} README \
   $PKG/usr/doc/$PRGNAM-$VERSION
 cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
 cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
diff --git a/academic/PhyML/PhyML.info b/academic/PhyML/PhyML.info
index 24bd673857..bdf7a9261f 100644
--- a/academic/PhyML/PhyML.info
+++ b/academic/PhyML/PhyML.info
@@ -1,8 +1,8 @@
 PRGNAM="PhyML"
-VERSION="3.3.20170530"
+VERSION="3.3.20180214"
 HOMEPAGE="https://github.com/stephaneguindon/phyml/"
-DOWNLOAD="http://ponce.cc/slackware/sources/repo/phyml-3.3.20170530.tar.gz"
-MD5SUM="8801c23dbdb295b6bbcd417f0010bb6a"
+DOWNLOAD="https://github.com/stephaneguindon/phyml/archive/v3.3.20180214/phyml-3.3.20180214.tar.gz"
+MD5SUM="85bb0f62b575e7169f8c62b2f3dafee5"
 DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
 REQUIRES="openmpi"
-- 
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