From 6cf070500874fd8b1e59e012726977cc1a3eec42 Mon Sep 17 00:00:00 2001 From: Petar Petrov Date: Sat, 14 Jan 2017 01:10:35 +0700 Subject: academic/FCSalyzer: Added (Flow cytometry analyser). Signed-off-by: Willy Sudiarto Raharjo --- academic/FCSalyzer/FCSalyzer.SlackBuild | 72 ++++++++++++++++++++++++++++++++ academic/FCSalyzer/FCSalyzer.desktop | 7 ++++ academic/FCSalyzer/FCSalyzer.info | 10 +++++ academic/FCSalyzer/FCSalyzer.png | Bin 0 -> 4726 bytes academic/FCSalyzer/README | 10 +++++ academic/FCSalyzer/doinst.sh | 3 ++ academic/FCSalyzer/slack-desc | 19 +++++++++ 7 files changed, 121 insertions(+) create mode 100644 academic/FCSalyzer/FCSalyzer.SlackBuild create mode 100644 academic/FCSalyzer/FCSalyzer.desktop create mode 100644 academic/FCSalyzer/FCSalyzer.info create mode 100644 academic/FCSalyzer/FCSalyzer.png create mode 100644 academic/FCSalyzer/README create mode 100644 academic/FCSalyzer/doinst.sh create mode 100644 academic/FCSalyzer/slack-desc (limited to 'academic/FCSalyzer') diff --git a/academic/FCSalyzer/FCSalyzer.SlackBuild b/academic/FCSalyzer/FCSalyzer.SlackBuild new file mode 100644 index 0000000000..e847a3cc94 --- /dev/null +++ b/academic/FCSalyzer/FCSalyzer.SlackBuild @@ -0,0 +1,72 @@ +#!/bin/sh + +# Slackware build script for FCSalyzer + +# Copyright 2017 Petar Petrov slackalaxy@gmail.com +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + +PRGNAM=FCSalyzer +VERSION=${VERSION:-0.9.11_alpha} +BUILD=${BUILD:-1} +TAG=${TAG:-_SBo} + +ARCH=noarch +SRCVER=0.9.11-alpha + +CWD=$(pwd) +TMP=${TMP:-/tmp/SBo} +PKG=$TMP/package-$PRGNAM +OUTPUT=${OUTPUT:-/tmp} + +set -e + +rm -rf $PKG +mkdir -p $TMP $PKG $OUTPUT +cd $TMP +rm -rf $PRGNAM-$VERSION +mkdir $PRGNAM-$VERSION +cd $PRGNAM-$VERSION +unzip $CWD/${PRGNAM}\ ${SRCVER}.zip + +chown -R root:root . +find -L . \ + \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ + -o -perm 511 \) -exec chmod 755 {} \; -o \ + \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ + -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; + +install -D -m755 $PRGNAM.jar $PKG/usr/bin/$PRGNAM.jar + +mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION +cp -a \ + Datafiles.txt License.txt package.html Readme.txt \ + $PKG/usr/doc/$PRGNAM-$VERSION +cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild + +mkdir -p $PKG/usr/share/{applications,pixmaps} +cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications +cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps + +mkdir -p $PKG/install +cat $CWD/slack-desc > $PKG/install/slack-desc +cat $CWD/doinst.sh > $PKG/install/doinst.sh + +cd $PKG +/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz} diff --git a/academic/FCSalyzer/FCSalyzer.desktop b/academic/FCSalyzer/FCSalyzer.desktop new file mode 100644 index 0000000000..0ac9a11783 --- /dev/null +++ b/academic/FCSalyzer/FCSalyzer.desktop @@ -0,0 +1,7 @@ +[Desktop Entry] +Type=Application +Exec=java -jar /usr/bin/FCSalyzer.jar +Terminal=false +Name=Flow cytometry FCSalyzer +Icon=FCSalyzer.png +Categories=Education; diff --git a/academic/FCSalyzer/FCSalyzer.info b/academic/FCSalyzer/FCSalyzer.info new file mode 100644 index 0000000000..1010408e23 --- /dev/null +++ b/academic/FCSalyzer/FCSalyzer.info @@ -0,0 +1,10 @@ +PRGNAM="FCSalyzer" +VERSION="0.9.11_alpha" +HOMEPAGE="https://sourceforge.net/projects/fcsalyzer/" +DOWNLOAD="https://sourceforge.net/projects/fcsalyzer/files/Version%200.9.11-alpha/FCSalyzer%200.9.11-alpha.zip" +MD5SUM="7b2b3ce7e92f7e2f9e1e050f5aedc0ba" +DOWNLOAD_x86_64="" +MD5SUM_x86_64="" +REQUIRES="jdk" +MAINTAINER="Petar Petrov" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/FCSalyzer/FCSalyzer.png b/academic/FCSalyzer/FCSalyzer.png new file mode 100644 index 0000000000..3700c87c2f Binary files /dev/null and b/academic/FCSalyzer/FCSalyzer.png differ diff --git a/academic/FCSalyzer/README b/academic/FCSalyzer/README new file mode 100644 index 0000000000..3453857402 --- /dev/null +++ b/academic/FCSalyzer/README @@ -0,0 +1,10 @@ +FCSalyzer: a free program for analysing flow cytometry data. + +FCSalyzer is a simple application for analysing flow cytometry data. It is +based on the "What you see is what you get" principle with the hope of +being intuitive to use. For more information, please visit the project web- +page. + +Supported datafiles (depending on the type of flow cytometer and +acquisition software) are listed in "datafiles.txt", found in the +documentation folder of the created package. diff --git a/academic/FCSalyzer/doinst.sh b/academic/FCSalyzer/doinst.sh new file mode 100644 index 0000000000..5fb28930db --- /dev/null +++ b/academic/FCSalyzer/doinst.sh @@ -0,0 +1,3 @@ +if [ -x /usr/bin/update-desktop-database ]; then + /usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1 +fi diff --git a/academic/FCSalyzer/slack-desc b/academic/FCSalyzer/slack-desc new file mode 100644 index 0000000000..8629037721 --- /dev/null +++ b/academic/FCSalyzer/slack-desc @@ -0,0 +1,19 @@ +# HOW TO EDIT THIS FILE: +# The "handy ruler" below makes it easier to edit a package description. +# Line up the first '|' above the ':' following the base package name, and +# the '|' on the right side marks the last column you can put a character in. +# You must make exactly 11 lines for the formatting to be correct. It's also +# customary to leave one space after the ':' except on otherwise blank lines. + + |-----handy-ruler------------------------------------------------------| +FCSalyzer: FCSalyzer (Flow cytometry analyser) +FCSalyzer: +FCSalyzer: FCSalyzer is a simple application for analysing flow cytometry +FCSalyzer: data. It is based on the "What you see is what you get" principle. +FCSalyzer: +FCSalyzer: Home: http://sourceforge.net/projects/FCSalyzer +FCSalyzer: +FCSalyzer: +FCSalyzer: +FCSalyzer: +FCSalyzer: -- cgit v1.2.3