diff options
Diffstat (limited to 'academic/ncbi-edirect/ncbi-edirect.SlackBuild')
-rw-r--r-- | academic/ncbi-edirect/ncbi-edirect.SlackBuild | 114 |
1 files changed, 114 insertions, 0 deletions
diff --git a/academic/ncbi-edirect/ncbi-edirect.SlackBuild b/academic/ncbi-edirect/ncbi-edirect.SlackBuild new file mode 100644 index 0000000000..19ea8fed86 --- /dev/null +++ b/academic/ncbi-edirect/ncbi-edirect.SlackBuild @@ -0,0 +1,114 @@ +#!/bin/bash + +# Slackware build script for ncbi-edirect + +# Copyright 2023 Petar Petrov, slackalaxy@gmail.com +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + +cd $(dirname $0) ; CWD=$(pwd) + +PRGNAM=ncbi-edirect +VERSION=${VERSION:-20.5.20231007} +BUILD=${BUILD:-1} +TAG=${TAG:-_SBo} +PKGTYPE=${PKGTYPE:-tgz} + +MANPG=ncbi-entrez-direct_19.0.20230216+dfsg-2.debian.tar.xz + +if [ -z "$ARCH" ]; then + case "$( uname -m )" in + i?86) ARCH=i586 ;; + arm*) ARCH=arm ;; + *) ARCH=$( uname -m ) ;; + esac +fi + +if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then + echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE" + exit 0 +fi + +if [ "$ARCH" != "x86_64" ]; then + printf "\n$ARCH is not supported... \n" + exit 1 +fi + +TMP=${TMP:-/tmp/SBo} +PKG=$TMP/package-$PRGNAM +OUTPUT=${OUTPUT:-/tmp} + +set -e + +rm -rf $PKG +mkdir -p $TMP $PKG $OUTPUT +cd $TMP +rm -rf $PRGNAM-$VERSION +mkdir $PRGNAM-$VERSION +cd $PRGNAM-$VERSION + +tar xvf $CWD/edirect-$VERSION.tar.gz +cd edirect +tar xvf $CWD/$MANPG +chown -R root:root . +find -L . \ + \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ + -o -perm 511 \) -exec chmod 755 {} \; -o \ + \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ + -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; + +# Move these to their proper place +mkdir -p $PKG/usr/share/$PRGNAM +mv ./{cmd,eutils} $PKG/usr/share/$PRGNAM + +mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION +mv ./{help,readme.pdf,README} $PKG/usr/doc/$PRGNAM-$VERSION + +# remove these +rm -rf ./{CA.pm,cacert.pem,Mozilla-CA.tar.gz} + +# include the binaries +mkdir -p $PKG/usr/bin +gunzip -c $CWD/rchive.Linux.gz > $PKG/usr/bin/rchive.Linux +gunzip -c $CWD/transmute.Linux.gz > $PKG/usr/bin/transmute.Linux +gunzip -c $CWD/xtract.Linux.gz > $PKG/usr/bin/xtract.Linux +chmod 755 $PKG/usr/bin/* + +# thanks Debian for the man pages +mkdir -p $PKG/usr/man/man1 +cp -a debian/man/* $PKG/usr/man/man1 +rm -rf debian + +# move what's left +cp -a * $PKG/usr/bin + +find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ + | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true + +find $PKG/usr/man -type f -exec gzip -9 {} \; +for i in $( find $PKG/usr/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; rm $i ; done + +mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION +cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild + +mkdir -p $PKG/install +cat $CWD/slack-desc > $PKG/install/slack-desc + +cd $PKG +/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE |