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diff --git a/academic/copasi/README b/academic/copasi/README index c640a01c87..1ebe37a34d 100644 --- a/academic/copasi/README +++ b/academic/copasi/README @@ -1,17 +1,17 @@ -COPASI is a package for modeling and simulation of biochemical networks, -popular in the field of systems biology. +COPASI is a package for modeling and simulation of chemical reaction +networks and other dynamical systems. -COPASI is a stand-alone program that simulates models of biochemical -networks using ODE solvers or Gillespie's stochastic simulation -algorithm. COPASI is compatible with models in SBML format. It also -performs several analyses, such as steady state, stability, parameter -sensitivity, elementary modes, Lyapunov exponents, optimization, and -parameter estimation. Data can be visualized in plots, histograms and -animations of network diagrams. COPASI's GUI is based on QT, but a -command line version is also included that allows for processing -computations in batch mode. +COPASI is a stand-alone program that simulates models of chemical +reaction networks using ODE/SDE solvers or Gillespie's stochastic +simulation algorithm. COPASI is compatible with models in SBML format. +It also performs several analyses, such as steady state, stability, +parameter sensitivity, elementary modes, Lyapunov exponents, +optimization, and parameter estimation. Data can be visualized in +plots, histograms and animations of network diagrams. COPASI's GUI is +based on QT, but a command line version is also included that allows +for processing computations in batch mode. COPASI is a collaboration between research groups at the Biocomplexity -Institute and Initiative at University of Virginia, University of +Institute and Initiative at University of Virginia, University of Heidelberg, University of Connecticut, and previously the University of Manchester, Virginia Tech, and the EML-Research. |