1 files changed, 14 insertions, 13 deletions
diff --git a/academic/PhyML/PhyML.SlackBuild b/academic/PhyML/PhyML.SlackBuild
index 5fb6ce9fcf..05fb80d8cc 100644
--- a/academic/PhyML/PhyML.SlackBuild
+++ b/academic/PhyML/PhyML.SlackBuild
@@ -4,17 +4,19 @@
 # Written by Petar Petrov, <ppetrov@paju.oulu.fi> and 
 # hereby submitted to the public domain
 
+# Thanks to Niels Horn for the handy modifications and
+# corrections!
+
 # THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING 
 # USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_ 
 # RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
 
 PRGNAM=PhyML		
-VERSION=${VERSION:-3.0}
+VERSION=${VERSION:-20110526}
 BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}	
 
 SRCNAM=$(echo $PRGNAM | tr A-Z a-z)
-SRCVER=2010023
 
 if [ -z "$ARCH" ]; then
   case "$( uname -m )" in
@@ -48,9 +50,9 @@ set -e
 rm -rf $PKG
 mkdir -p $TMP $PKG $OUTPUT
 cd $TMP
-rm -rf $SRCNAM
-tar xvf $CWD/${SRCNAM}_$SRCVER.tar.gz
-cd $SRCNAM
+rm -rf $SRCNAM-$VERSION
+tar xvf $CWD/$SRCNAM-$VERSION.tar.gz
+cd $SRCNAM-$VERSION
 chown -R root:root .
 find . \
  \( -perm 777 -o -perm 775 -o -perm 711 -o -perm 555 -o -perm 511 \) \
@@ -58,9 +60,6 @@ find . \
  \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
  -exec chmod 644 {} \;
 
-aclocal
-autoconf -f
-automake -f
 ./configure \
   --prefix=/usr \
   --libdir=/usr/lib${LIBDIRSUFFIX} \
@@ -70,11 +69,13 @@ automake -f
   --docdir=/usr/doc/$PRGNAM-$VERSION \
   --build=$ARCH-slackware-linux
 
-#Use our CFLAGS
-sed -i "/^AM_CFLAGS/s/=/+=/" src/Makefile
+# Use our CFLAGS
+sed -i "/^CFLAGS/s/=/+=/" src/Makefile
+sed -i "/^CFLAGS/s/=/+=/" Makefile
 
-AM_CFLAGS="$SLKCFLAGS" \
-  make
+CFLAGS="$SLKCFLAGS" \
+CXXFLAGS="$SLKCFLAGS" \
+make
 make install DESTDIR=$PKG
 
 find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
@@ -82,7 +83,7 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr
 
 mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
 cp -a \
-  AUTHORS ChangeLog COPYING INSTALL \
+  doc/phyml_manual.pdf AUTHORS ChangeLog COPYING INSTALL README \
   $PKG/usr/doc/$PRGNAM-$VERSION
 cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
 cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References