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diff --git a/academic/FastTree/References b/academic/FastTree/References new file mode 100644 index 0000000000..01aef49abf --- /dev/null +++ b/academic/FastTree/References @@ -0,0 +1,14 @@ +These papers describe FastTree: the first paper describes FastTree 1.0, +and the second paper describes heuristic minimum-evolution SPR moves, +maximum-likelihood NNIs, and SH-like local supports. We have also +eliminated the O(N2) steps in the neighbor-joining phase, and +implemented maximum-likelihood NNI moves and SH-like supports (see the +ChangeLog). + +Price, M.N., Dehal, P.S., and Arkin, A.P. (2009) FastTree: Computing +Large Minimum-Evolution Trees with Profiles instead of a Distance Matrix. +Molecular Biology and Evolution 26:1641-1650, doi:10.1093/molbev/msp077. + +Price, M.N., Dehal, P.S., and Arkin, A.P. (2010) FastTree 2 -- +Approximately Maximum-Likelihood Trees for Large Alignments. PLoS ONE, +5(3):e9490. doi:10.1371/journal.pone.0009490. |