diff options
| author |   Rob van Nues | 2019-08-03 01:21:42 +0200 |
|---|---|---|
| committer |   Willy Sudiarto Raharjo | 2019-08-03 01:21:42 +0200 |
| commit | 53ab6902c2818a949ebfad0635e66e72dad3c413 (patch) | |
| tree | c414a7b621cd9d0ce34216f4ff1f3096214f2c7c /academic | |
| parent | 0785dbba03919456985cd04e8baf60d25bcfc8b0 (diff) | |
| download | slackbuilds-53ab6902c2818a949ebfad0635e66e72dad3c413.tar.gz | |
academic/pysam: Updated for version 0.15.3.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/pysam/pysam.SlackBuild | 17 | ||||
| -rw-r--r-- | academic/pysam/pysam.info | 8 |
2 files changed, 19 insertions, 6 deletions
diff --git a/academic/pysam/pysam.SlackBuild b/academic/pysam/pysam.SlackBuild index c2ff916cc9..f5c3d8615e 100644 --- a/academic/pysam/pysam.SlackBuild +++ b/academic/pysam/pysam.SlackBuild @@ -24,10 +24,14 @@ PRGNAM=pysam -VERSION=${VERSION:-0.15.2} +VERSION=${VERSION:-0.15.3} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} +#set which python version to install it for +PYTHON2=false +PYTHON3=true + if [ -z "$ARCH" ]; then case "$( uname -m )" in i?86) ARCH=i586 ;; @@ -70,7 +74,16 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -python setup.py install --root=$PKG +#use system htslib instead +export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX +export HTSLIB_INCLUDE_DIR=/usr/include + +if $PYTHON2; then + python setup.py install --root=$PKG +fi +if $PYTHON3; then + python3 setup.py install --root=$PKG +fi find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true diff --git a/academic/pysam/pysam.info b/academic/pysam/pysam.info index 2951c27d95..a7747f8d20 100644 --- a/academic/pysam/pysam.info +++ b/academic/pysam/pysam.info @@ -1,10 +1,10 @@ PRGNAM="pysam" -VERSION="0.15.2" +VERSION="0.15.3" HOMEPAGE="https://github.com/pysam-developers/pysam" -DOWNLOAD="https://github.com/pysam-developers/pysam/archive/v0.15.2/pysam-0.15.2.tar.gz" -MD5SUM="3000f77fd997d864fe551b3001fbac22" +DOWNLOAD="https://github.com/pysam-developers/pysam/archive/v0.15.3/pysam-0.15.3.tar.gz" +MD5SUM="f8586362c20c754bc698c04e32e11a63" DOWNLOAD_x86_64="" MD5SUM_x86_64="" -REQUIRES="" +REQUIRES="python3 htslib" MAINTAINER="Rob van Nues" EMAIL="sborg63@disroot.org" |