diff options
| author |   brobr | 2022-05-20 00:53:21 +0200 |
|---|---|---|
| committer |   Willy Sudiarto Raharjo | 2022-05-21 03:25:05 +0200 |
| commit | 215dfddbe284fa193a46b2791357387f1cd31cdf (patch) | |
| tree | 896b2c9cb81f089906ab240c941763f4fc62eeca /academic | |
| parent | 6022d411cbf5757090d7e84c8b6561565e6d2841 (diff) | |
| download | slackbuilds-215dfddbe284fa193a46b2791357387f1cd31cdf.tar.gz | |
academic/pysam: Updated for version 0.19.0.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/pysam/pysam.SlackBuild | 11 | ||||
| -rw-r--r-- | academic/pysam/pysam.info | 6 |
2 files changed, 11 insertions, 6 deletions
diff --git a/academic/pysam/pysam.SlackBuild b/academic/pysam/pysam.SlackBuild index 369da78f83..2489d6cd26 100644 --- a/academic/pysam/pysam.SlackBuild +++ b/academic/pysam/pysam.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for pysam -# Copyright 2017-2021 Rob van Nues +# Copyright 2017-2022 Rob van Nues # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -25,8 +25,8 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=pysam -VERSION=${VERSION:-0.18.0} -BUILD=${BUILD:-2} +VERSION=${VERSION:-0.19.0} +BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -80,6 +80,11 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; +# pysam now at htslib-1.15; SBo-htslib is at 1.15.1: +# can use system htslib: +export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX +export HTSLIB_INCLUDE_DIR=/usr/include + #the source does not allow 'read' to 'other', which could cause a problem on reloading a Jupyter-notebook chmod 644 pysam.egg-info/* diff --git a/academic/pysam/pysam.info b/academic/pysam/pysam.info index ba82e9ba82..2df162ea2d 100644 --- a/academic/pysam/pysam.info +++ b/academic/pysam/pysam.info @@ -1,8 +1,8 @@ PRGNAM="pysam" -VERSION="0.18.0" +VERSION="0.19.0" HOMEPAGE="https://github.com/pysam-developers/pysam" -DOWNLOAD="https://pypi.python.org/packages/source/p/pysam/pysam-0.18.0.tar.gz" -MD5SUM="9748f447dee300d57c64960ae2ceab2d" +DOWNLOAD="https://pypi.python.org/packages/source/p/pysam/pysam-0.19.0.tar.gz" +MD5SUM="010374b2a33238c6e3236a1bcfded096" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="htslib" |