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author Petar Petrov2011-09-04 18:22:25 +0200
committer Niels Horn2011-09-04 18:22:25 +0200
commit76835af92c45a894fc63666f0e3d10875c3b27ac (patch)
tree7216dfda816ee4bf33bc509b5f585f0b86b8d836 /academic
parenta42442c7f8a27af3cc588bc8a9b12a685505f619 (diff)
downloadslackbuilds-76835af92c45a894fc63666f0e3d10875c3b27ac.tar.gz
academic/sequence-analysis: Added (Biologic sequences analysis)
Signed-off-by: Niels Horn <niels.horn@slackbuilds.org>
Diffstat (limited to 'academic')
-rw-r--r--academic/sequence-analysis/README1
-rw-r--r--academic/sequence-analysis/doinst.sh3
-rw-r--r--academic/sequence-analysis/sequence-analysis.SlackBuild43
-rw-r--r--academic/sequence-analysis/sequence-analysis.desktop7
-rw-r--r--academic/sequence-analysis/sequence-analysis.info10
-rw-r--r--academic/sequence-analysis/sequence-analysis.pngbin0 -> 2858 bytes
-rw-r--r--academic/sequence-analysis/slack-desc19
7 files changed, 83 insertions, 0 deletions
diff --git a/academic/sequence-analysis/README b/academic/sequence-analysis/README
new file mode 100644
index 0000000000..82dab2ac4c
--- /dev/null
+++ b/academic/sequence-analysis/README
@@ -0,0 +1 @@
+A collage of coding projects for biologic sequences analysis.
diff --git a/academic/sequence-analysis/doinst.sh b/academic/sequence-analysis/doinst.sh
new file mode 100644
index 0000000000..01ca62b341
--- /dev/null
+++ b/academic/sequence-analysis/doinst.sh
@@ -0,0 +1,3 @@
+if [ -x /usr/bin/update-desktop-database ]; then
+ /usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1
+fi \ No newline at end of file
diff --git a/academic/sequence-analysis/sequence-analysis.SlackBuild b/academic/sequence-analysis/sequence-analysis.SlackBuild
new file mode 100644
index 0000000000..a88e01a25b
--- /dev/null
+++ b/academic/sequence-analysis/sequence-analysis.SlackBuild
@@ -0,0 +1,43 @@
+#!/bin/sh
+
+# Slackware build script for sequence-analysis
+# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and
+# hereby submitted to the public domain
+
+# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING
+# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_
+# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
+
+PRGNAM=sequence-analysis
+VERSION=${VERSION:-1.6.0}
+ARCH=noarch
+BUILD=${BUILD:-1}
+TAG=${TAG:-_SBo}
+
+CWD=$(pwd)
+TMP=${TMP:-/tmp/SBo}
+PKG=$TMP/package-$PRGNAM
+OUTPUT=${OUTPUT:-/tmp}
+
+set -e
+
+rm -rf $PKG
+mkdir -p $TMP $PKG $OUTPUT
+cd $TMP
+
+install -D -m755 $CWD/sa.jar $PKG/usr/bin/$PRGNAM.jar
+
+mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
+cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
+
+# Menu item and icon
+mkdir -p $PKG/usr/share/{applications,pixmaps}
+cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications
+cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps
+
+mkdir -p $PKG/install
+cat $CWD/slack-desc > $PKG/install/slack-desc
+cat $CWD/doinst.sh > $PKG/install/doinst.sh
+
+cd $PKG
+/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
diff --git a/academic/sequence-analysis/sequence-analysis.desktop b/academic/sequence-analysis/sequence-analysis.desktop
new file mode 100644
index 0000000000..20a23697a4
--- /dev/null
+++ b/academic/sequence-analysis/sequence-analysis.desktop
@@ -0,0 +1,7 @@
+[Desktop Entry]
+Categories=Education;
+Exec="java -jar /usr/bin/sequence-analysis.jar -Xms512m -Xmx1024m"
+Icon=sequence-analysis.png
+Name=Sequence Analysis
+StartupNotify=false
+Type=Application
diff --git a/academic/sequence-analysis/sequence-analysis.info b/academic/sequence-analysis/sequence-analysis.info
new file mode 100644
index 0000000000..aaaada4600
--- /dev/null
+++ b/academic/sequence-analysis/sequence-analysis.info
@@ -0,0 +1,10 @@
+PRGNAM="sequence-analysis"
+VERSION="1.6.0"
+HOMEPAGE="http://informagen.com/SA/"
+DOWNLOAD="http://informagen.com/SA/sa.jar"
+MD5SUM="48609bfdd0d689cc62467159a0308886"
+DOWNLOAD_x86_64=""
+MD5SUM_x86_64=""
+MAINTAINER="Petar Petrov"
+EMAIL="ppetrov@paju.oulu.fi"
+APPROVED="Niels Horn"
diff --git a/academic/sequence-analysis/sequence-analysis.png b/academic/sequence-analysis/sequence-analysis.png
new file mode 100644
index 0000000000..d242a7c048
--- /dev/null
+++ b/academic/sequence-analysis/sequence-analysis.png
Binary files differ
diff --git a/academic/sequence-analysis/slack-desc b/academic/sequence-analysis/slack-desc
new file mode 100644
index 0000000000..325951ad3a
--- /dev/null
+++ b/academic/sequence-analysis/slack-desc
@@ -0,0 +1,19 @@
+# HOW TO EDIT THIS FILE:
+# The "handy ruler" below makes it easier to edit a package description. Line
+# up the first '|' above the ':' following the base package name, and the '|'
+# on the right side marks the last column you can put a character in. You must
+# make exactly 11 lines for the formatting to be correct. It's also
+# customary to leave one space after the ':'.
+
+ |-----handy-ruler------------------------------------------------------|
+sequence-analysis: sequence-analysis (Biologic sequences analysis)
+sequence-analysis:
+sequence-analysis: A collage of coding projects for biologic sequences analysis.
+sequence-analysis:
+sequence-analysis:
+sequence-analysis:
+sequence-analysis:
+sequence-analysis:
+sequence-analysis:
+sequence-analysis:
+sequence-analysis: Home: http://informagen.com/SA/