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author Petar Petrov2015-03-27 09:28:40 +0100
committer Willy Sudiarto Raharjo2015-03-27 09:28:40 +0100
commit812815694128a9ff596bb117b6a92decc2767707 (patch)
treec0f5c4368937552461490173f31cea9294f135a1 /academic/ugene/README
parent3f04be71a0a920e11d5d706875c0a8810a2f685b (diff)
downloadslackbuilds-812815694128a9ff596bb117b6a92decc2767707.tar.gz
academic/ugene: Updated for version 1.16.1.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
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@@ -37,10 +37,14 @@ program. Almost all of them can be found at SlackBuilds.org:
- clustalo (Clustal Omega)
- clustalw (Multiple Sequence Alignment)
- cufflinks (A reference-guided assembler for RNA-Seq experiments)
+- cutadapt (Trim adapters from high-throughput sequencing reads)
+- fastqc (A quality control tool for high throughput sequence data)
- ncbi-blast (BLAST: Basic Local Alignment Search Tool)
- ncbi-blast-plus (BLAST+ Command Line Applications)
- PhyML (Phylogenetic estimation using Maximum Likelihood)
- samtools (Sequence Alignment/Map Tools)
+- snpEff (Genetic variant annotation and effect prediction toolbox)
+- spades (SPAdes Genome Assembler)
- spidey (mRNA-to-genomic alignment)
- t_coffee (A multiple sequence alignment program)
- tabix (Generic indexer for TAB-delimited genome position files )