diff options
author | Petar Petrov | 2020-06-13 08:16:36 +0200 |
---|---|---|
committer | Willy Sudiarto Raharjo | 2020-06-14 12:45:44 +0200 |
commit | 2fbe379fea6e381906483ee9ce2fd42b85ac8906 (patch) | |
tree | ac95d648c4bb81194d0f202f52ad0088938aed88 /academic/seqkit/seqkit.SlackBuild | |
parent | dcf10d0e3d6a12a8de776e90345587311b19670b (diff) | |
download | slackbuilds-2fbe379fea6e381906483ee9ce2fd42b85ac8906.tar.gz |
academic/seqkit: Added (toolkit for FASTA/Q file manipulation)
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/seqkit/seqkit.SlackBuild')
-rw-r--r-- | academic/seqkit/seqkit.SlackBuild | 73 |
1 files changed, 73 insertions, 0 deletions
diff --git a/academic/seqkit/seqkit.SlackBuild b/academic/seqkit/seqkit.SlackBuild new file mode 100644 index 0000000000..eee90bb1d1 --- /dev/null +++ b/academic/seqkit/seqkit.SlackBuild @@ -0,0 +1,73 @@ +#!/bin/sh + +# Slackware build script for seqkit + +# Copyright 2020 Petar Petrov slackalaxy@gmail.com +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + +PRGNAM=seqkit +VERSION=${VERSION:-0.12.1} +BUILD=${BUILD:-1} +TAG=${TAG:-_SBo} + +if [ -z "$ARCH" ]; then + ARCH=$( uname -m ) +fi + +case "$ARCH" in + i?86) ARCH=i386 + BINARCH="386" + ;; + x86_64) + BINARCH="amd64" + ;; + *) + printf "\n\n%s\n" "$ARCH is not supported." + exit 1 + ;; +esac + +CWD=$(pwd) +TMP=${TMP:-/tmp/SBo} +PKG=$TMP/package-$PRGNAM +OUTPUT=${OUTPUT:-/tmp} + +set -e + +rm -rf $PKG +mkdir -p $TMP $PKG $OUTPUT +cd $TMP +rm -rf $PRGNAM-$VERSION +mkdir $PRGNAM-$VERSION +tar xvf $CWD/${PRGNAM}_linux_${BINARCH}.tar.gz + +install -D -m755 $PRGNAM $PKG/usr/bin/$PRGNAM + +find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ + | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true + +mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION +cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild + +mkdir -p $PKG/install +cat $CWD/slack-desc > $PKG/install/slack-desc + +cd $PKG +/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz} |