diff options
| author |   brobr | 2022-03-04 16:14:47 +0100 |
|---|---|---|
| committer |   Willy Sudiarto Raharjo | 2022-03-05 02:20:12 +0100 |
| commit | 7521abef93ae74b764d6fe9dcf7b6edeae96057c (patch) | |
| tree | 67fa4c28f9c714a1664af8ae06dd9d9819dadeef /academic/pysam | |
| parent | 4d4bf91f6fe7e1f78ebb9de0927275c0370f71fe (diff) | |
| download | slackbuilds-7521abef93ae74b764d6fe9dcf7b6edeae96057c.tar.gz | |
academic/pysam: Use internal htslib-1.14
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/pysam')
| -rw-r--r-- | academic/pysam/pysam.SlackBuild | 7 |
1 files changed, 1 insertions, 6 deletions
diff --git a/academic/pysam/pysam.SlackBuild b/academic/pysam/pysam.SlackBuild index 29449fc242..369da78f83 100644 --- a/academic/pysam/pysam.SlackBuild +++ b/academic/pysam/pysam.SlackBuild @@ -26,7 +26,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=pysam VERSION=${VERSION:-0.18.0} -BUILD=${BUILD:-1} +BUILD=${BUILD:-2} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -80,11 +80,6 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -### pysam linked to htslib-1.14; SBo-htslib is at 1.14: -### for use system htslib: -export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX -export HTSLIB_INCLUDE_DIR=/usr/include - #the source does not allow 'read' to 'other', which could cause a problem on reloading a Jupyter-notebook chmod 644 pysam.egg-info/* |