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author Petar Petrov2016-06-05 14:34:33 +0200
committer Willy Sudiarto Raharjo2016-06-05 17:21:58 +0200
commit2e35245d3348d6dc84be945a705b5c5c21d781c9 (patch)
tree9ded8275bb0f228955b40c13dcc51041b1f94d6c /academic/cistrome-conductGO/README
parentaad6293dd9d81fc8ae8ceed38a852e405a0dbf45 (diff)
downloadslackbuilds-2e35245d3348d6dc84be945a705b5c5c21d781c9.tar.gz
academic/cistrome-conductGO: Added (find the highest expressed TFs)
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+The cistrome refers to "the set of cis-acting targets of a trans-
+acting factor on a genome-wide scale, also known as the in vivo
+genome-wide location of transcription factor binding-sites or histone
+modifications". The term cistrome is a portmanteau of cistron + genome
+and was coined by investigators at the Dana-Farber Cancer Institute
+and Harvard Medical School.
+
+This is cistrome-conductGO (GO analysis): a galaxy tool to find the
+top-n highest expressed TFs. For a list of input genes, this tool uses
+R/BioC packages (GO, GOstats) to identify over represented GO terms.
+
+GO analysis depends on several R script tools (GOstats, GO.db,
+hgu133a.db, hgu133b.db, hgu133plus2.db, hgu95av2.db, mouse430a2.db,
+celegans.db, drosophila2.db, org.Hs.eg.db, org.Mm.eg.db, org.Ce.eg.db,
+org.Dm.eg.db). Visit https://bioconductor.org/ for details and see
+"biocondictor.txt" (also copied to the documentation folder of the
+created package) for batch installation of the required Bioconductor
+Packages.
+
+NOTE!
+This just repackages the script redistributed by the UniPro Ugene
+project, part of their External Tools package. This is the reason the
+homepage link points to Ugene. The source is hosted on Source Forge by
+the SlackBuild maintainer.