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author Rob van Nues2019-04-12 18:06:28 +0200
committer Willy Sudiarto Raharjo2019-04-12 18:11:42 +0200
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downloadslackbuilds-e0472971fa3956f91f1d56ace7906a75b5a199a4.tar.gz
academic/ViennaRNA: Added (C Library).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
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+# ViennaRNA Package
+
+A C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures.
+
+Amongst other things, our implementations allow you to:
+
+- predict minimum free energy secondary structures
+- calculate the partition function for the ensemble of structures
+- compute various equilibrium probabilities
+- calculate suboptimal structures in a given energy range
+- compute local structures in long sequences
+- predict consensus secondary structures from a multiple sequence alignment
+- predict melting curves
+- search for sequences folding into a given structure
+- compare two secondary structures
+- predict hybridization structures of two RNA molecules
+
+The package includes `Perl 5`, `Python 2`, and `Python 3` modules that give
+access to almost all functions of the C library from within the respective
+scripting languages.
+
+There is also a set of programs for analyzing sequence and distance
+data using split decomposition, statistical geometry, and cluster methods.
+They are not maintained any more and not built by default.
+
+The code very rarely uses static arrays, and all programs should work for
+sequences up to a length of 32,700 (if you have huge amounts of memory that
+is).