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author | Petar Petrov | 2018-01-12 23:52:20 +0100 |
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committer | Willy Sudiarto Raharjo | 2018-01-13 01:13:05 +0100 |
commit | 08da4a154dfcf2a0b187b0a3a4f467eeb3b3b1e5 (patch) | |
tree | d916bb2907a77e7f1be38d80a67729c662155408 /academic/RepeatMasker/README.SLACKWARE | |
parent | 7e06cba42fde15af4055d31241cd224ac23ed303 (diff) | |
download | slackbuilds-08da4a154dfcf2a0b187b0a3a4f467eeb3b3b1e5.tar.gz |
academic/RepeatMasker: Added (Screen DNA sequence).
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
Diffstat (limited to 'academic/RepeatMasker/README.SLACKWARE')
-rw-r--r-- | academic/RepeatMasker/README.SLACKWARE | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/academic/RepeatMasker/README.SLACKWARE b/academic/RepeatMasker/README.SLACKWARE new file mode 100644 index 0000000000..dd3313fd62 --- /dev/null +++ b/academic/RepeatMasker/README.SLACKWARE @@ -0,0 +1,31 @@ +After install go fo /opt/RepeatMasker and run the RepeatMasker +Configuration Program: + +# perl ./configure + +Paths are as follows: + +**PERL PROGRAM** +/usr/bin/perl + +**REPEATMASKER INSTALLATION DIRECTORY** +/opt/RepeatMasker + +**TRF PROGRAM** +/usr/bin/trf + +Add a Search Engine: +1. CrossMatch: you should obtain this yourself, with the proper + license, following the instructions here http://www.phrap.org/ +2. RMBlast - NCBI Blast with RepeatMasker extensions: this is + available from SBo. +3. WUBlast/ABBlast (required by DupMasker): you should obtain this + yourself, with the proper license, following the instructions here + https://blast.advbiocomp.com/licensing/ +4. HMMER3.1 & DFAM: this is available from SBo. + +**RMBlast (rmblastn) INSTALLATION PATH** +/usr/bin + +**HMMER INSTALLATION PATH** +/usr/bin |