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author Petar Petrov2018-01-12 23:52:20 +0100
committer Willy Sudiarto Raharjo2018-01-13 01:13:05 +0100
commit08da4a154dfcf2a0b187b0a3a4f467eeb3b3b1e5 (patch)
treed916bb2907a77e7f1be38d80a67729c662155408 /academic/RepeatMasker/README.SLACKWARE
parent7e06cba42fde15af4055d31241cd224ac23ed303 (diff)
downloadslackbuilds-08da4a154dfcf2a0b187b0a3a4f467eeb3b3b1e5.tar.gz
academic/RepeatMasker: Added (Screen DNA sequence).
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
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+After install go fo /opt/RepeatMasker and run the RepeatMasker
+Configuration Program:
+
+# perl ./configure
+
+Paths are as follows:
+
+**PERL PROGRAM**
+/usr/bin/perl
+
+**REPEATMASKER INSTALLATION DIRECTORY**
+/opt/RepeatMasker
+
+**TRF PROGRAM**
+/usr/bin/trf
+
+Add a Search Engine:
+1. CrossMatch: you should obtain this yourself, with the proper
+ license, following the instructions here http://www.phrap.org/
+2. RMBlast - NCBI Blast with RepeatMasker extensions: this is
+ available from SBo.
+3. WUBlast/ABBlast (required by DupMasker): you should obtain this
+ yourself, with the proper license, following the instructions here
+ https://blast.advbiocomp.com/licensing/
+4. HMMER3.1 & DFAM: this is available from SBo.
+
+**RMBlast (rmblastn) INSTALLATION PATH**
+/usr/bin
+
+**HMMER INSTALLATION PATH**
+/usr/bin