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author Petar Petrov2017-10-07 17:05:35 +0200
committer Willy Sudiarto Raharjo2017-10-11 01:19:45 +0200
commit0a3c56553633f2af5933a6a86ba231bb27588c97 (patch)
tree2d0079e59bd67ee1096c926ee4053b97b6dfaa53 /academic/PhyML/README
parent8ca05dd513e5dc9718f8956befa032968ee5c468 (diff)
downloadslackbuilds-0a3c56553633f2af5933a6a86ba231bb27588c97.tar.gz
academic/PhyML: Updated for version 3.3.20170530.
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
Diffstat (limited to 'academic/PhyML/README')
-rw-r--r--academic/PhyML/README11
1 files changed, 3 insertions, 8 deletions
diff --git a/academic/PhyML/README b/academic/PhyML/README
index fd66cda123..b6ce38f0bd 100644
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+++ b/academic/PhyML/README
@@ -9,16 +9,11 @@ It also implements two methods to evaluate branch supports in a sound
statistical framework (the non-parametric bootstrap and the
approximate likelihood ratio test).
-NOTE 1: This also builds Phyrex and the MPI (using multiple processors)
-version of PhyML. The executable of the latter is called phyml-mpi and
-requires openmpi. If you do not want them to be built in the package,
+This also builds MPI (using multiple processors) version of PhyML, which
+requires 'openmpi'. Other additional programs built by the script are
+Phyrex and PhyTime. If you do not want them to be built in the package,
check the SlackBuild script.
-NOTE 2: PhyTime used to be part of the PhyML package. However, PhyTime
-from the latest releases of PhyML does not build anymore. meanwhile,
-PhyTime is available separately, which installs the latest version that
-builds.
-
For details and citation
New Algorithms and Methods to Estimate Maximum-Likelihood
Phylogenies: Assessing the Performance of PhyML 3.0. Guindon S.,