#!/bin/sh # Slackware build script for MetaPhlAn2 # Copyright 2019-2020 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is # permitted provided that the following conditions are met: # # 1. Redistributions of this script must retain the above copyright # notice, this list of conditions and the following disclaimer. # # THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED # WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF # MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO # EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, # SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, # PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; # OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR # OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=MetaPhlAn2 VERSION=${VERSION:-2.9.5.3} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} SRCNAM=metaphlan2 AUTHOR=biobakery COMMIT=3a075f914593 if [ -z "$ARCH" ]; then case "$( uname -m )" in i?86) ARCH=i586 ;; arm*) ARCH=arm ;; *) ARCH=$( uname -m ) ;; esac fi CWD=$(pwd) TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM OUTPUT=${OUTPUT:-/tmp} ARCH=noarch set -e # Construct the source tarball name. if [ -e $CWD/$COMMIT.tar.gz ]; then TARBALL=${COMMIT} else TARBALL=${AUTHOR}-${SRCNAM}-${COMMIT} fi rm -rf $PKG mkdir -p $TMP $PKG $OUTPUT cd $TMP rm -rf ${AUTHOR}-${SRCNAM}-${COMMIT} tar xvf $CWD/$TARBALL.tar.gz cd ${AUTHOR}-${SRCNAM}-${COMMIT} chown -R root:root . find -L . \ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ -o -perm 511 \) -exec chmod 755 {} \; -o \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; mkdir -p $PKG/usr/share/$PRGNAM cp -a \ *.py utils strainphlan_src \ $PKG/usr/share/$PRGNAM mkdir $PKG/usr/bin cd $PKG/usr/bin ln -s ../share/$PRGNAM/metaphlan2.py ln -s ../share/$PRGNAM/strainphlan.py cd - mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION cp -a \ README.md changeset.txt license.txt strainphlan_tutorial \ $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References mkdir -p $PKG/install cat $CWD/slack-desc > $PKG/install/slack-desc cd $PKG /sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}