From 7758d99be3c24c1ed00a27d366a3b97cf8c8dce6 Mon Sep 17 00:00:00 2001
From: Petar Petrov
Date: Sun, 5 Jan 2020 03:57:25 -0600
Subject: academic/meme-db-gomo: Added (MEME Suite GOMo databases)

Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
---
 academic/meme-db-gomo/README                  | 37 +++++++++++++++
 academic/meme-db-gomo/meme-db-gomo.SlackBuild | 65 +++++++++++++++++++++++++++
 academic/meme-db-gomo/meme-db-gomo.info       | 10 +++++
 academic/meme-db-gomo/slack-desc              | 19 ++++++++
 4 files changed, 131 insertions(+)
 create mode 100644 academic/meme-db-gomo/README
 create mode 100644 academic/meme-db-gomo/meme-db-gomo.SlackBuild
 create mode 100644 academic/meme-db-gomo/meme-db-gomo.info
 create mode 100644 academic/meme-db-gomo/slack-desc

(limited to 'academic')

diff --git a/academic/meme-db-gomo/README b/academic/meme-db-gomo/README
new file mode 100644
index 0000000000..34ed28d819
--- /dev/null
+++ b/academic/meme-db-gomo/README
@@ -0,0 +1,37 @@
+GOMo Databases (updated 17 Feb 2015) to be used with MEME Suite:
+
+Single Species
+Danio rerio (Zebrafish)
+Drosophila Melanogaster (Fruit fly)
+Gallus Gallus (Chicken)
+Rattus norvegicus (Rat)
+Schizosaccharomyces pombe
+
+Multiple Species
+Arabidopsis thaliana (Plant)
+
+Comparative Species
+Oryza sativa (Rice)
+Populus trichocarpa (Poplar)
+Sorghum brachupodium
+Brachypodium distachyon (purple false brome)
+E.coli K12
+E.coli CTF073
+Salmonella enterica serovar Typhi Ty2
+Yersinia pestis CO92
+Homo sapiens (Human)
+Mus musculus (Mouse)
+Canis familiaris (Dog)
+Equus caballus (Horse)
+Mus musculus (Mouse)
+Canis familiaris (Dog)
+Rattus Norvegicus (Rat)
+Equus caballus (Horse)
+Homo sapiens (Human)
+Saccharomyces cerevisiae (yeast)
+S. bayanus
+S. mikatae
+S. paradoxus
+
+Note!
+The unarchived size of this is ~378 MB
diff --git a/academic/meme-db-gomo/meme-db-gomo.SlackBuild b/academic/meme-db-gomo/meme-db-gomo.SlackBuild
new file mode 100644
index 0000000000..ab81c7466f
--- /dev/null
+++ b/academic/meme-db-gomo/meme-db-gomo.SlackBuild
@@ -0,0 +1,65 @@
+#!/bin/sh
+
+# Slackware build script for meme-db-gomo
+
+# Copyright 2020 Petar Petrov slackalaxy@gmail.com
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+#    notice, this list of conditions and the following disclaimer.
+#
+#  THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+#  WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+#  MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO
+#  EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+#  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+#  PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+#  OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+#  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+#  OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+#  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+PRGNAM=meme-db-gomo
+VERSION=${VERSION:-3.2}
+BUILD=${BUILD:-1}
+TAG=${TAG:-_SBo}
+
+SRCNAM=gomo_databases
+
+ARCH=noarch
+
+CWD=$(pwd)
+TMP=${TMP:-/tmp/SBo}
+PKG=$TMP/package-$PRGNAM
+OUTPUT=${OUTPUT:-/tmp}
+
+set -e
+
+rm -rf $PKG
+mkdir -p $TMP $PKG $OUTPUT
+cd $PKG
+
+# Extract directly in the $PKG folder
+mkdir -p var/lib/meme-suite
+cd var/lib/meme-suite
+tar xvf $CWD/${SRCNAM}.${VERSION}.tgz
+cd $SRCNAM
+
+chown -R root:root .
+find -L . \
+ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
+  -o -perm 511 \) -exec chmod 755 {} \; -o \
+ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
+  -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
+
+mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
+cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
+
+mkdir -p $PKG/install
+cat $CWD/slack-desc > $PKG/install/slack-desc
+
+cd $PKG
+/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
diff --git a/academic/meme-db-gomo/meme-db-gomo.info b/academic/meme-db-gomo/meme-db-gomo.info
new file mode 100644
index 0000000000..b70eb8f874
--- /dev/null
+++ b/academic/meme-db-gomo/meme-db-gomo.info
@@ -0,0 +1,10 @@
+PRGNAM="meme-db-gomo"
+VERSION="3.2"
+HOMEPAGE="http://meme-suite.org/db/gomo"
+DOWNLOAD="http://meme-suite.org/meme-software/Databases/gomo/gomo_databases.3.2.tgz"
+MD5SUM="5b8fcf3c541b30e2a66580f289132e97"
+DOWNLOAD_x86_64=""
+MD5SUM_x86_64=""
+REQUIRES=""
+MAINTAINER="Petar Petrov"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/meme-db-gomo/slack-desc b/academic/meme-db-gomo/slack-desc
new file mode 100644
index 0000000000..b75eb92870
--- /dev/null
+++ b/academic/meme-db-gomo/slack-desc
@@ -0,0 +1,19 @@
+# HOW TO EDIT THIS FILE:
+# The "handy ruler" below makes it easier to edit a package description.
+# Line up the first '|' above the ':' following the base package name, and
+# the '|' on the right side marks the last column you can put a character in.
+# You must make exactly 11 lines for the formatting to be correct.  It's also
+# customary to leave one space after the ':' except on otherwise blank lines.
+
+            |-----handy-ruler------------------------------------------------------|
+meme-db-gomo: meme-db-gomo (MEME Suite GOMo databases)
+meme-db-gomo:
+meme-db-gomo: GOMo Databases to be used with MEME Suite.
+meme-db-gomo:
+meme-db-gomo:
+meme-db-gomo:
+meme-db-gomo:
+meme-db-gomo:
+meme-db-gomo:
+meme-db-gomo:
+meme-db-gomo:
-- 
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