From 38c30e023e8a2269f23d20e8173f5e43aacb1699 Mon Sep 17 00:00:00 2001 From: Petar Petrov Date: Mon, 19 Dec 2016 06:50:40 +0700 Subject: academic/wehi-hackit: Added (Clip a stream of cells). Signed-off-by: Willy Sudiarto Raharjo --- academic/wehi-hackit/README | 6 +++ academic/wehi-hackit/doinst.sh | 3 ++ academic/wehi-hackit/slack-desc | 19 +++++++++ academic/wehi-hackit/wehi-hackit.SlackBuild | 59 ++++++++++++++++++++++++++++ academic/wehi-hackit/wehi-hackit.desktop | 7 ++++ academic/wehi-hackit/wehi-hackit.info | 10 +++++ academic/wehi-hackit/wehi-hackit.png | Bin 0 -> 7402 bytes 7 files changed, 104 insertions(+) create mode 100644 academic/wehi-hackit/README create mode 100644 academic/wehi-hackit/doinst.sh create mode 100644 academic/wehi-hackit/slack-desc create mode 100644 academic/wehi-hackit/wehi-hackit.SlackBuild create mode 100644 academic/wehi-hackit/wehi-hackit.desktop create mode 100644 academic/wehi-hackit/wehi-hackit.info create mode 100644 academic/wehi-hackit/wehi-hackit.png (limited to 'academic') diff --git a/academic/wehi-hackit/README b/academic/wehi-hackit/README new file mode 100644 index 0000000000..8a3fa559f9 --- /dev/null +++ b/academic/wehi-hackit/README @@ -0,0 +1,6 @@ +Where it is feared that a flow cytometry data file has been violated, +for example at the start of the file by cells carried over from the +previous sample, or at the end of the file by a nozzle blockage, +Hackit (wehi-hackit) can be used to clip the offending stream of cells +from the file. It may be used also to concatenate the data from a +number of files. diff --git a/academic/wehi-hackit/doinst.sh b/academic/wehi-hackit/doinst.sh new file mode 100644 index 0000000000..5fb28930db --- /dev/null +++ b/academic/wehi-hackit/doinst.sh @@ -0,0 +1,3 @@ +if [ -x /usr/bin/update-desktop-database ]; then + /usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1 +fi diff --git a/academic/wehi-hackit/slack-desc b/academic/wehi-hackit/slack-desc new file mode 100644 index 0000000000..a6845b0b1a --- /dev/null +++ b/academic/wehi-hackit/slack-desc @@ -0,0 +1,19 @@ +# HOW TO EDIT THIS FILE: +# The "handy ruler" below makes it easier to edit a package description. +# Line up the first '|' above the ':' following the base package name, and +# the '|' on the right side marks the last column you can put a character in. +# You must make exactly 11 lines for the formatting to be correct. It's also +# customary to leave one space after the ':' except on otherwise blank lines. + + |-----handy-ruler------------------------------------------------------| +wehi-hackit: wehi-hackit (Clip a stream of cells from flow cytometry files) +wehi-hackit: +wehi-hackit: Where it is feared that a flow cytometry data file has been violated, +wehi-hackit: for example at the start of the file by cells carried over from the +wehi-hackit: previous sample, or at the end of the file by a nozzle blockage, +wehi-hackit: Hackit can be used to clip the offending stream of cells from the +wehi-hackit: file. It may be used also to concatenate the data from a number of +wehi-hackit: files. +wehi-hackit: +wehi-hackit: http://www.frankbattye.com.au/freesoftware.html +wehi-hackit: diff --git a/academic/wehi-hackit/wehi-hackit.SlackBuild b/academic/wehi-hackit/wehi-hackit.SlackBuild new file mode 100644 index 0000000000..b24aa12991 --- /dev/null +++ b/academic/wehi-hackit/wehi-hackit.SlackBuild @@ -0,0 +1,59 @@ +#!/bin/sh + +# Slackware build script for wehi-hackit + +# Copyright 2016 Petar Petrov slackalaxy@gmail.com +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + +PRGNAM=wehi-hackit +VERSION=${VERSION:-20050203} +BUILD=${BUILD:-1} +TAG=${TAG:-_SBo} + +ARCH=noarch +SRCNAM=Hackit + +CWD=$(pwd) +TMP=${TMP:-/tmp/SBo} +PKG=$TMP/package-$PRGNAM +OUTPUT=${OUTPUT:-/tmp} + +set -e + +rm -rf $PKG +mkdir -p $TMP $PKG $OUTPUT +cd $TMP + +install -D -m755 $CWD/$SRCNAM.jar $PKG/usr/bin/$PRGNAM.jar + +mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION +cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild + +# Couldn't find an icon, so I made one myself, from my own data :) +mkdir -p $PKG/usr/share/{applications,pixmaps} +cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications +cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps + +mkdir -p $PKG/install +cat $CWD/slack-desc > $PKG/install/slack-desc +cat $CWD/doinst.sh > $PKG/install/doinst.sh + +cd $PKG +/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz} diff --git a/academic/wehi-hackit/wehi-hackit.desktop b/academic/wehi-hackit/wehi-hackit.desktop new file mode 100644 index 0000000000..25594dd5f8 --- /dev/null +++ b/academic/wehi-hackit/wehi-hackit.desktop @@ -0,0 +1,7 @@ +[Desktop Entry] +Type=Application +Exec=java -jar /usr/bin/wehi-hackit.jar +Terminal=false +Name=Flow cytometry Hackit +Icon=wehi-hackit.png +Categories=Education; diff --git a/academic/wehi-hackit/wehi-hackit.info b/academic/wehi-hackit/wehi-hackit.info new file mode 100644 index 0000000000..962314eea7 --- /dev/null +++ b/academic/wehi-hackit/wehi-hackit.info @@ -0,0 +1,10 @@ +PRGNAM="wehi-hackit" +VERSION="20050203" +HOMEPAGE="http://www.frankbattye.com.au/freesoftware.html" +DOWNLOAD="http://www.frankbattye.com.au/downloads/Hackit.jar" +MD5SUM="1b498994d569b147a461b698633078e1" +DOWNLOAD_x86_64="" +MD5SUM_x86_64="" +REQUIRES="jdk" +MAINTAINER="Petar Petrov" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/wehi-hackit/wehi-hackit.png b/academic/wehi-hackit/wehi-hackit.png new file mode 100644 index 0000000000..aae08b3969 Binary files /dev/null and b/academic/wehi-hackit/wehi-hackit.png differ -- cgit v1.2.3