diff options
Diffstat (limited to 'academic/vCAPS_coevolution/vCAPS_coevolution.SlackBuild')
| -rw-r--r-- | academic/vCAPS_coevolution/vCAPS_coevolution.SlackBuild | 21 |
1 files changed, 12 insertions, 9 deletions
diff --git a/academic/vCAPS_coevolution/vCAPS_coevolution.SlackBuild b/academic/vCAPS_coevolution/vCAPS_coevolution.SlackBuild index 9b000762b1..f00aea698e 100644 --- a/academic/vCAPS_coevolution/vCAPS_coevolution.SlackBuild +++ b/academic/vCAPS_coevolution/vCAPS_coevolution.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for vCAPS_coevolution -# Copyright 2020-2021 Petar Petrov slackalaxy@gmail.com +# Copyright 2020-2022 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -25,7 +25,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=vCAPS_coevolution -VERSION=${VERSION:-2.0_1UN} +VERSION=${VERSION:-2.0_2UN} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -42,9 +42,6 @@ if [ -z "$ARCH" ]; then esac fi -# If the variable PRINT_PACKAGE_NAME is set, then this script will report what -# the name of the created package would be, and then exit. This information -# could be useful to other scripts. if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE" exit 0 @@ -68,7 +65,6 @@ else LIBDIRSUFFIX="" fi -# This is needed for vCAPS to find its libraries at runtime. Thanks Urchlay! LIBDIRPATH="-Wl,-rpath,/usr/lib${LIBDIRSUFFIX}/Bpp1.9" set -e @@ -87,7 +83,7 @@ find -L . \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; # This is needed for gcc in Slackware 14.2 -sed -i "s:CC=g++ -g:CC=g++ -g -std=c++11:" Makefile +sed -i "s:CC=g++ -g:CC=g++-5 -g -std=c++11:" Makefile # Use our CFLAGS and the custom (legacy) lib path sed -i "s:CFLAGS=:CFLAGS=$SLKCFLAGS $LIBDIRPATH:" Makefile @@ -101,14 +97,21 @@ sed -i "s:-lbpp-seq:-L/usr/lib64${LIBDIRSUFFIX}/Bpp1.9 -lbpp-seq:g" Makefile # Rename the produced executable sed -i "s:-o caps:-o $BINNAM:" Makefile -# Use our unofficial patch -patch -p1 -i $CWD/caps_verbose.patch +# Use our patches +patch -p1 -i $CWD/01_caps_verbose.patch +patch -p1 -i $CWD/02_caps_sort_input.patch + +# we already specified g++-5 above, so no need for this +#source /etc/profile.d/gcc5.sh make all # Install the binary produced from our patched source, as "vCAPS" install -D -m755 $BINNAM $PKG/usr/bin/$BINNAM +find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ + | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true + mkdir -p $PKG/usr/share/$PRGNAM cp -a sample structures trees TLR1.fa.out $PKG/usr/share/$PRGNAM |