1 files changed, 38 insertions, 0 deletions
diff --git a/academic/vCAPS_coevolution/02_caps_sort_input.patch b/academic/vCAPS_coevolution/02_caps_sort_input.patch
new file mode 100644
index 0000000000..917bca7cab
--- /dev/null
+++ b/academic/vCAPS_coevolution/02_caps_sort_input.patch
@@ -0,0 +1,38 @@
+diff -pruN old/caps.cpp new/caps.cpp
+--- old/caps.cpp	2022-01-20 09:30:24.409886691 +0200
++++ new/caps.cpp	2022-01-20 09:39:10.669845265 +0200
+@@ -1,4 +1,5 @@
+ #include<iostream>
++#include <algorithm>
+ #include<fstream>
+ #include"BCFasta.h"
+ #include"file_manip.h"
+@@ -15,7 +16,7 @@
+ #include<sys/time.h>
+ #include<iomanip>
+ #include <bits/stdc++.h> 
+-
++#include <vector> 
+ 
+ 
+ #include <Seq/SequenceApplicationTools.h>
+@@ -69,6 +70,10 @@
+ const gsl_rng_type * T;
+ gsl_rng *r;
+ 
++// make sure filenames are sorted!
++// https://stackoverflow.com/a/34757557
++bool compareFunction (std::string a, std::string b) {return a<b;} 
++
+ vector<double> totaltempnew;
+ double alphathresh = 0;
+ int main(int argc, char *argv[]){
+@@ -189,6 +194,8 @@ int main(int argc, char *argv[]){
+ 
+ 	vector<string> files;
+ 	files = Folder_to_vector(mystring.c_str());
++	// make sure filenames are sorted!
++	std::sort(files.begin(),files.end(),compareFunction);
+ 
+ 	Fasta_vector file;
+ 	file.ref_num=0;