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-rw-r--r--academic/rbio/autotoolize.diff246
1 files changed, 246 insertions, 0 deletions
diff --git a/academic/rbio/autotoolize.diff b/academic/rbio/autotoolize.diff
new file mode 100644
index 0000000000..4c495922ee
--- /dev/null
+++ b/academic/rbio/autotoolize.diff
@@ -0,0 +1,246 @@
+diff --git a/Demo/Makefile.am b/Demo/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Demo/Makefile.am
+@@ -0,0 +1,22 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
++LDADD = $(top_builddir)/Source/librbio.la $(SUITESPARSECONFIG_LIBS)
++
++EXTRA_DIST = \
++ RBdemo.out
++
++# Disable the .out implicit pattern rule. Prevents GNU make from
++# adding bogus dependencies for the .out files listed above.
++%.out: %
++
++check_PROGRAMS = \
++ RBdemo
++
++RBdemo_SOURCES = RBdemo.c
++
++RB = \
++ $(top_srcdir)/RBio/private/west0479.rua
++
++check-local: $(check_PROGRAMS) $(RB)
++ ./RBdemo < $(top_srcdir)/RBio/private/west0479.rua
++
++CLEANFILES = temp.rb
+diff --git a/Include/Makefile.am b/Include/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Include/Makefile.am
+@@ -0,0 +1 @@
++pkginclude_HEADERS = RBio.h
+diff --git a/Makefile.am b/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Makefile.am
+@@ -0,0 +1,5 @@
++SUBDIRS = Include Source RBio Demo Tcov
++EXTRA_DIST = README.txt Doc/ChangeLog Doc/License.txt Doc/gpl.txt
++
++pkgconfigdir = $(libdir)/pkgconfig
++pkgconfig_DATA = rbio.pc
+diff --git a/RBio/Makefile.am b/RBio/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/RBio/Makefile.am
+@@ -0,0 +1,3 @@
++SUBDIRS = private
++dist_noinst_DATA = \
++ mywest
+diff --git a/RBio/private/Makefile.am b/RBio/private/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/RBio/private/Makefile.am
+@@ -0,0 +1,7 @@
++dist_noinst_DATA = \
++ bcsstk01.rb \
++ farm.rb \
++ lap_25.pse \
++ lap_25.rb \
++ west0479.rb \
++ west0479.rua
+diff --git a/Source/Makefile.am b/Source/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Source/Makefile.am
+@@ -0,0 +1,18 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
++
++RBIOSRC = \
++ RBio.c
++
++lib_LTLIBRARIES = librbio.la
++noinst_LTLIBRARIES = librbioi.la librbiol.la
++
++librbioi_la_SOURCES = $(RBIOSRC)
++librbioi_la_LIBADD = $(SUITESPARSECONFIG_LIBS)
++librbioi_la_CPPFLAGS = $(AM_CPPFLAGS) -DINT
++
++librbiol_la_SOURCES = $(RBIOSRC)
++librbiol_la_LIBADD = $(SUITESPARSECONFIG_LIBS)
++
++librbio_la_SOURCES =
++librbio_la_LIBADD = librbioi.la librbiol.la
++librbio_la_LDFLAGS = -no-undefined -version-number 2:1:1
+diff --git a/Tcov/Makefile.am b/Tcov/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Tcov/Makefile.am
+@@ -0,0 +1,92 @@
++AM_CC = gcc
++AM_CFLAGS = -O0 -g --coverage
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
++LDADD = $(SUITESPARSECONFIG_LIBS)
++
++dist_noinst_DATA = \
++ matrices/Tina_DisCog.tar.gz \
++ matrices/dwg961a.tar.gz \
++ matrices/m4.rb \
++ matrices/m4b.rb \
++ matrices/mhd1280a.tar.gz \
++ matrices/mhd1280b.tar.gz \
++ matrices/plskz362.tar.gz \
++ matrices/qc324.tar.gz \
++ matrices/s4.rb \
++ matrices/west0067.tar.gz \
++ mangled/1.rb \
++ mangled/2.rb \
++ mangled/3.rb \
++ mangled/4.rb \
++ mangled/5.rb \
++ mangled/6.rb \
++ mangled/7.rb \
++ mangled/8.rb \
++ mangled/9.rb \
++ mangled/10.rb \
++ mangled/11.rb \
++ mangled/12.rb \
++ mangled/13.rb \
++ mangled/14.rb \
++ mangled/15.rb
++
++check_PROGRAMS = \
++ RBdemo \
++ RBtest
++
++RBdemo_SOURCES = $(top_srcdir)/Source/RBio.c $(top_srcdir)/Demo/RBdemo.c
++RBtest_SOURCES = $(top_srcdir)/Source/RBio.c RBtest.c
++
++TAR = tar -O -xvvzf
++
++RB = \
++ $(top_srcdir)/RBio/private/bcsstk01.rb \
++ $(top_srcdir)/RBio/private/farm.rb \
++ $(top_srcdir)/RBio/private/lap_25.pse \
++ $(top_srcdir)/RBio/private/lap_25.rb \
++ $(top_srcdir)/RBio/private/west0479.rb \
++ $(top_srcdir)/RBio/private/west0479.rua \
++ $(addprefix $(srcdir)/,$(dist_noinst_DATA))
++
++COV = \
++ $(top_srcdir)/Source/RBio.c \
++ $(top_srcdir)/Demo/RBdemo.c \
++ $(srcdir)/RBtest.c
++
++check-local: $(check_PROGRAMS) $(RB) $(COV)
++ -./RBdemo $(top_srcdir)/RBio/private/bcsstk01.rb
++ -./RBdemo $(top_srcdir)/RBio/private/farm.rb
++ -./RBdemo $(top_srcdir)/RBio/private/lap_25.pse
++ -./RBdemo $(top_srcdir)/RBio/private/lap_25.rb
++ -./RBdemo $(top_srcdir)/RBio/private/west0479.rb
++ -./RBdemo $(top_srcdir)/RBio/private/west0479.rua
++ -$(TAR) $(srcdir)/matrices/dwg961a.tar.gz dwg961a/dwg961a.rb | ./RBdemo
++ -$(TAR) $(srcdir)/matrices/mhd1280a.tar.gz mhd1280a/mhd1280a.rb | ./RBdemo
++ -$(TAR) $(srcdir)/matrices/mhd1280b.tar.gz mhd1280b/mhd1280b.rb | ./RBdemo
++ -$(TAR) $(srcdir)/matrices/qc324.tar.gz qc324/qc324.rb | ./RBdemo
++ -$(TAR) $(srcdir)/matrices/plskz362.tar.gz plskz362/plskz362.rb | ./RBdemo
++ -$(TAR) $(srcdir)/matrices/west0067.tar.gz west0067/west0067.rb | ./RBdemo
++ -$(TAR) $(srcdir)/matrices/Tina_DisCog.tar.gz Tina_DisCog/Tina_DisCog.rb | ./RBdemo
++ -./RBdemo $(srcdir)/matrices/m4.rb
++ -./RBdemo $(srcdir)/matrices/s4.rb
++ -./RBdemo $(srcdir)/matrices/m4b.rb
++ -./RBdemo $(srcdir)/mangled/1.rb
++ -./RBdemo $(srcdir)/mangled/2.rb
++ -./RBdemo $(srcdir)/mangled/3.rb
++ -./RBdemo $(srcdir)/mangled/4.rb
++ -./RBdemo $(srcdir)/mangled/5.rb
++ -./RBdemo $(srcdir)/mangled/6.rb
++ -./RBdemo $(srcdir)/mangled/7.rb
++ -./RBdemo $(srcdir)/mangled/8.rb
++ -./RBdemo $(srcdir)/mangled/9.rb
++ -./RBdemo $(srcdir)/mangled/10.rb
++ -./RBdemo $(srcdir)/mangled/11.rb
++ -./RBdemo $(srcdir)/mangled/12.rb
++ -./RBdemo $(srcdir)/mangled/13.rb
++ -./RBdemo $(srcdir)/mangled/14.rb
++ -./RBdemo $(srcdir)/mangled/15.rb
++ -./RBtest
++ -gcov -o $(builddir) $(COV) > gcov.out
++ -grep -c "#####" RBio.c.gcov
++
++CLEANFILES = gcov.out *.gcov *.gcda *.gcno temp*.rb
+diff --git a/configure.ac b/configure.ac
+new file mode 100644
+--- /dev/null
++++ b/configure.ac
+@@ -0,0 +1,41 @@
++# -*- Autoconf -*-
++# Process this file with autoconf to produce a configure script.
++
++AC_PREREQ([2.69])
++AC_INIT([RBio],[2.1.1],[DrTimothyAldenDavis@gmail.com],[rbio],[http://www.suitesparse.com/])
++AC_CONFIG_SRCDIR([Source/RBio.c])
++AC_CONFIG_HEADERS([config.h])
++AM_INIT_AUTOMAKE([foreign])
++LT_INIT
++
++# Checks for programs.
++AC_PROG_INSTALL
++AC_PROG_CC
++
++LIBS_SAVED=$LIBS
++
++# Checks for libraries.
++PKG_PROG_PKG_CONFIG
++PKG_CHECK_MODULES([SUITESPARSECONFIG],[suitesparseconfig],
++ [],
++ [AC_MSG_ERROR([cannot find suitesparseconfig])])
++
++# Checks for header files.
++AC_CHECK_HEADERS([stddef.h stdlib.h string.h])
++
++# Checks for typedefs, structures, and compiler characteristics.
++
++# Checks for library functions.
++
++LIBS=$LIBS_SAVED
++
++AC_CONFIG_FILES([
++ rbio.pc
++ Makefile
++ Demo/Makefile
++ Include/Makefile
++ RBio/Makefile
++ RBio/private/Makefile
++ Source/Makefile
++ Tcov/Makefile])
++AC_OUTPUT
+diff --git a/rbio.pc.in b/rbio.pc.in
+new file mode 100644
+--- /dev/null
++++ b/rbio.pc.in
+@@ -0,0 +1,12 @@
++prefix=@prefix@
++exec_prefix=@exec_prefix@
++libdir=@libdir@
++includedir=@includedir@
++
++Name: @PACKAGE_NAME@
++Description: Toolbox for reading/writing sparse matrices in Rutherford/Boeing format
++Version: @PACKAGE_VERSION@
++URL: @PACKAGE_URL@
++Requires.private: suitesparseconfig
++Libs: -L${libdir} -lrbio
++Cflags: -I${includedir}/rbio