diff options
Diffstat (limited to 'academic/ncbi-blast+/ncbi-blast+.SlackBuild')
| -rw-r--r-- | academic/ncbi-blast+/ncbi-blast+.SlackBuild | 19 |
1 files changed, 13 insertions, 6 deletions
diff --git a/academic/ncbi-blast+/ncbi-blast+.SlackBuild b/academic/ncbi-blast+/ncbi-blast+.SlackBuild index 5958727d3f..26a8981142 100644 --- a/academic/ncbi-blast+/ncbi-blast+.SlackBuild +++ b/academic/ncbi-blast+/ncbi-blast+.SlackBuild @@ -4,7 +4,7 @@ # This takes the place of ncbi-blast-plus (2013-2019), which just # repackaged the binaries provided by upstream. -# Copyright 2013-2021 Petar Petrov slackalaxy@gmail.com +# Copyright 2013-2023 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -27,7 +27,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=ncbi-blast+ -VERSION=${VERSION:-2.11.0} +VERSION=${VERSION:-2.14.1} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -42,9 +42,6 @@ if [ -z "$ARCH" ]; then esac fi -# If the variable PRINT_PACKAGE_NAME is set, then this script will report what -# the name of the created package would be, and then exit. This information -# could be useful to other scripts. if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE" exit 0 @@ -95,7 +92,7 @@ cd c++ # Do not specify the libraries dir by the default way (--libdir=/lib${LIBDIRSUFFIX}), # because the libs will not be included in the package. CFLAGS="$SLKCFLAGS" \ -CXXFLAGS="$SLKCFLAGS" \ +CXXFLAGS="$SLKCFLAGS -Wno-narrowing" \ ./configure \ --prefix=/usr \ --libdir='${exec_prefix}'/lib${LIBDIRSUFFIX} \ @@ -121,6 +118,16 @@ make prefix=$PKG/usr install find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true +# fix a few permissions +chmod 0644 $PKG/usr/include/ncbi-tools++/algo/dustmask/*.tex +chmod 0644 $PKG/usr/include/ncbi-tools++/objects/gbproj/*.{hpp,h} +chmod 0644 $PKG/usr/include/ncbi-tools++/objects/taxon3/*.hpp +chmod 0644 $PKG/usr/include/ncbi-tools++/objtools/edit/*.hpp +chmod 0755 $PKG/usr/lib${LIBDIRSUFFIX}/*.so + +# remove static libs +rm -rf $PKG/usr/lib${LIBDIRSUFFIX}/*.a + mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild |