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-rw-r--r--academic/mrbayes/mrbayes.SlackBuild45
-rw-r--r--academic/mrbayes/mrbayes.info6
2 files changed, 28 insertions, 23 deletions
diff --git a/academic/mrbayes/mrbayes.SlackBuild b/academic/mrbayes/mrbayes.SlackBuild
index 5154bdee24..2bf1289cb4 100644
--- a/academic/mrbayes/mrbayes.SlackBuild
+++ b/academic/mrbayes/mrbayes.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for mrbayes
-# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
+# Copyright 2013-2019 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@@ -23,13 +23,14 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=mrbayes
-VERSION=${VERSION:-3.2.6}
+SRCNAM=MrBayes
+VERSION=${VERSION:-3.2.7a}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
if [ -z "$ARCH" ]; then
case "$( uname -m )" in
- i?86) ARCH=i486 ;;
+ i?86) ARCH=i586 ;;
arm*) ARCH=arm ;;
*) ARCH=$( uname -m ) ;;
esac
@@ -40,8 +41,8 @@ TMP=${TMP:-/tmp/SBo}
PKG=$TMP/package-$PRGNAM
OUTPUT=${OUTPUT:-/tmp}
-if [ "$ARCH" = "i486" ]; then
- SLKCFLAGS="-O2 -march=i486 -mtune=i686"
+if [ "$ARCH" = "i586" ]; then
+ SLKCFLAGS="-O2 -march=i586 -mtune=i686"
LIBDIRSUFFIX=""
elif [ "$ARCH" = "i686" ]; then
SLKCFLAGS="-O2 -march=i686 -mtune=i686"
@@ -59,9 +60,9 @@ set -e
rm -rf $PKG
mkdir -p $TMP $PKG $OUTPUT
cd $TMP
-rm -rf ${PRGNAM}-${VERSION}
-tar xvf $CWD/$PRGNAM-$VERSION.tar.gz
-cd ${PRGNAM}-${VERSION}
+rm -rf ${SRCNAM}-${VERSION}
+tar xvf $CWD/$SRCNAM-$VERSION.tar.gz
+cd ${SRCNAM}-${VERSION}
chown -R root:root .
find -L . \
\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
@@ -69,11 +70,6 @@ find -L . \
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
-cd src
-autoconf
-
-CFLAGS="$SLKCFLAGS" \
-CXXFLAGS="$SLKCFLAGS" \
./configure \
--prefix=/usr \
--libdir=/usr/lib${LIBDIRSUFFIX} \
@@ -84,17 +80,26 @@ CXXFLAGS="$SLKCFLAGS" \
--with-beagle=no \
--build=$ARCH-slackware-linux
-make
-install -D -m755 mb $PKG/usr/bin/$PRGNAM
+# Fix the examples path
+sed -i "s:/share:/share/$PRGNAM:" examples/Makefile
+sed -i 's:examples/${PACKAGE}:examples:g' examples/Makefile
+
+# Use our CFLAGS
+sed -i "/^CFLAGS/s/=/+=/" Makefile
+
+make CFLAGS="$SLKCFLAGS"
+make install DESTDIR=$PKG
+
+# Rename the executable
+cd $PKG/usr/bin
+mv mb $PRGNAM
+cd -
find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
-mkdir -p $PKG/usr/share/$PRGNAM
-cp -a ../examples $PKG/usr/share/$PRGNAM
-
-mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
-cp -a gpl.txt ../documentation/* $PKG/usr/doc/$PRGNAM-$VERSION
+# Add these too to the doc folder
+cp -a INSTALL TODO $PKG/usr/doc/$PRGNAM-$VERSION
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
diff --git a/academic/mrbayes/mrbayes.info b/academic/mrbayes/mrbayes.info
index 547aa09398..f00c0fc95f 100644
--- a/academic/mrbayes/mrbayes.info
+++ b/academic/mrbayes/mrbayes.info
@@ -1,8 +1,8 @@
PRGNAM="mrbayes"
-VERSION="3.2.6"
+VERSION="3.2.7a"
HOMEPAGE="http://mrbayes.sourceforge.net/"
-DOWNLOAD="http://ponce.cc/slackware/sources/repo/mrbayes-3.2.6.tar.gz"
-MD5SUM="95f9822f24be47b976bf87540b55d1fe"
+DOWNLOAD="https://github.com/NBISweden/MrBayes/archive/v3.2.7a/MrBayes-3.2.7a.tar.gz"
+MD5SUM="504236626ce9a2de1066a8520672f0cc"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""