diff options
Diffstat (limited to 'academic/fiji')
| -rw-r--r-- | academic/fiji/ImageJ2.desktop | 2 | ||||
| -rw-r--r-- | academic/fiji/README | 5 | ||||
| -rw-r--r-- | academic/fiji/fiji.SlackBuild | 63 | ||||
| -rw-r--r-- | academic/fiji/fiji.info | 12 |
4 files changed, 43 insertions, 39 deletions
diff --git a/academic/fiji/ImageJ2.desktop b/academic/fiji/ImageJ2.desktop index 87d25dddda..404207c1ec 100644 --- a/academic/fiji/ImageJ2.desktop +++ b/academic/fiji/ImageJ2.desktop @@ -2,7 +2,7 @@ Name=Fiji (ImageJ 2) Comment=Fiji is just ImageJ Type=Application -Categories=Education;Graphics; +Categories=Graphics;Education; Exec=fiji Terminal=false Icon=fiji diff --git a/academic/fiji/README b/academic/fiji/README index 525d5bb3de..1b51100f6a 100644 --- a/academic/fiji/README +++ b/academic/fiji/README @@ -32,10 +32,7 @@ Fiji is Just ImageJ, with extras. It is a distribution of ImageJ with many plugins useful for scientific image analysis in fields such as life sciences. It is actively maintained, with updates released often. -NOTE! -The download link points to an unversioned archive. This means that -he MD5SUM will change when the tarball is updated from upstream. When -this happens, please notify the maintainer. +NOTE: This comes with its own Java environment. Citing Schindelin, J.; Arganda-Carreras, I. & Frise, E. et al. (2012) diff --git a/academic/fiji/fiji.SlackBuild b/academic/fiji/fiji.SlackBuild index 41c118aaa9..137669d5c6 100644 --- a/academic/fiji/fiji.SlackBuild +++ b/academic/fiji/fiji.SlackBuild @@ -1,8 +1,8 @@ -#!/bin/sh +#!/bin/bash # Slackware build script for fiji -# Copyright 2018-2019 Petar Petrov slackalaxy@gmail.com +# Copyright 2018-2023 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -22,40 +22,47 @@ # OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. +cd $(dirname $0) ; CWD=$(pwd) + PRGNAM=fiji -DIRNAM=Fiji.app -VERSION=${VERSION:-20190718} +VERSION=${VERSION:-20230801_1717} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} +PKGTYPE=${PKGTYPE:-tgz} + +DIRNAM=Fiji.app if [ -z "$ARCH" ]; then - case "$( uname -m )" in - i?86) ARCH=i386 ;; - arm*) ARCH=arm ;; - *) ARCH=$( uname -m ) ;; - esac + ARCH=$( uname -m ) +fi + +# Stop if arch is not supported +# 2023-05-16 DW: better if it's before PRINT_PACKAGE_NAME +if [ "$ARCH" != "x86_64" ]; then + printf "\n$ARCH is not supported... \n" + exit 1 +fi + +# If the variable PRINT_PACKAGE_NAME is set, then this script will report what +# the name of the created package would be, and then exit. This information +# could be useful to other scripts. +if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then + echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE" + exit 0 fi -CWD=$(pwd) TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM OUTPUT=${OUTPUT:-/tmp} -UPDATER=imagej-updater-0.9.3.jar - set -e -# Stop if arch is not supported -if [ "$ARCH" != "i386" ] && [ "$ARCH" != "x86_64" ]; then - printf "\n\n$ARCH is not supported... \n" - exit 1 -fi - rm -rf $PKG mkdir -p $TMP $PKG $OUTPUT cd $TMP rm -rf $DIRNAM -tar xvf $CWD/${PRGNAM}-nojre.tar.gz +#tar xvf $CWD/${PRGNAM}-linux64.tar.gz +unzip $CWD/${PRGNAM}-linux64.zip cd $DIRNAM chown -R root:root . find -L . \ @@ -65,11 +72,7 @@ find -L . \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; # Rename the binary we need -if [ "$ARCH" = "x86_64" ]; then - mv ImageJ-linux64 $PRGNAM -else - mv ImageJ-linux32 $PRGNAM -fi +mv ImageJ-linux64 $PRGNAM # We will put here two tools, so they are not run at startup. mkdir -p unused @@ -84,21 +87,25 @@ mv ../plugins/Scripts/Plugins/AutoRun/Check_Required_Update_Sites.js . # is your system, so if you want this functionality, then comment out # the line below. You can always "enable" it, by placing it in the jars # folder. -mv ../jars/$UPDATER . +mv ../jars/imagej-updater-* . cd .. # Update plugins, so that the latest are included in the package. This # will download stuff during the package creation, something that is -# against the policy of SlackBuilds.org. However, it is your system, +# against the policy of SlackBuilds.org. However, it is _your_ system, # so if you _really_ want this, uncomment the line below. # ./$PRGNAM --update list-local-only # Copy the folders, db.xml and the renamed binary to /opt mkdir -p $PKG/opt/$PRGNAM cp -a \ + Contents \ images \ jars \ + java \ + lib \ + licenses \ luts \ macros \ plugins \ @@ -118,7 +125,7 @@ $PKG/opt/$PRGNAM cp $CWD/ImageJ2.desktop $PKG/opt/$PRGNAM # Install the simple wrapper -install -D -m755 $CWD/$PRGNAM $PKG/usr/bin/$PRGNAM +install -D -m 755 $CWD/$PRGNAM $PKG/usr/bin/$PRGNAM find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true @@ -137,4 +144,4 @@ cat $CWD/slack-desc > $PKG/install/slack-desc cat $CWD/doinst.sh > $PKG/install/doinst.sh cd $PKG -/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz} +/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE diff --git a/academic/fiji/fiji.info b/academic/fiji/fiji.info index 57f83d4ff2..ac7d400024 100644 --- a/academic/fiji/fiji.info +++ b/academic/fiji/fiji.info @@ -1,10 +1,10 @@ PRGNAM="fiji" -VERSION="20190718" +VERSION="20230801_1717" HOMEPAGE="https://fiji.sc/" -DOWNLOAD="https://downloads.imagej.net/fiji/latest/fiji-nojre.tar.gz" -MD5SUM="645bd38332fb50107da42bf716884e31" -DOWNLOAD_x86_64="" -MD5SUM_x86_64="" -REQUIRES="jdk" +DOWNLOAD="UNSUPPORTED" +MD5SUM="" +DOWNLOAD_x86_64="https://downloads.imagej.net/fiji/archive/20230801-1717/fiji-linux64.zip" +MD5SUM_x86_64="9965c8c1c101866c66019a0a511da143" +REQUIRES="" MAINTAINER="Petar Petrov" EMAIL="slackalaxy@gmail.com" |