diff options
Diffstat (limited to 'academic/bowtie2/bowtie2.SlackBuild')
| -rw-r--r-- | academic/bowtie2/bowtie2.SlackBuild | 39 |
1 files changed, 19 insertions, 20 deletions
diff --git a/academic/bowtie2/bowtie2.SlackBuild b/academic/bowtie2/bowtie2.SlackBuild index 8f74ea36e4..37f440626e 100644 --- a/academic/bowtie2/bowtie2.SlackBuild +++ b/academic/bowtie2/bowtie2.SlackBuild @@ -1,9 +1,9 @@ -#!/bin/sh +#!/bin/bash # Slackware build script for bowtie2 # Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com -# Copyright 2018 Rob van Nues sborg63@disroot.org +# Copyright 2018-2024 Rob van Nues sborg63@disroot.org # # All rights reserved. # @@ -24,10 +24,13 @@ # OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. +cd $(dirname $0) ; CWD=$(pwd) + PRGNAM=bowtie2 -VERSION=${VERSION:-2.3.5.1} +VERSION=${VERSION:-2.5.3} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} +PKGTYPE=${PKGTYPE:-tgz} if [ -z "$ARCH" ]; then case "$( uname -m )" in @@ -37,23 +40,21 @@ if [ -z "$ARCH" ]; then esac fi -CWD=$(pwd) +if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then + echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE" + exit 0 +fi + TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM OUTPUT=${OUTPUT:-/tmp} -if [ "$ARCH" = "i586" ]; then - SLKCFLAGS="-O2 -march=i586 -mtune=i686" - LIBDIRSUFFIX="" -elif [ "$ARCH" = "i686" ]; then - SLKCFLAGS="-O2 -march=i686 -mtune=i686" - LIBDIRSUFFIX="" -elif [ "$ARCH" = "x86_64" ]; then +if [ "$ARCH" = "x86_64" ]; then SLKCFLAGS="-O2 -fPIC" LIBDIRSUFFIX="64" else - SLKCFLAGS="-O2" - LIBDIRSUFFIX="" + printf "\n$ARCH is unsupported by $PRGNAM\n" + exit 1 fi set -e @@ -72,8 +73,6 @@ find -L . \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; #Use our FLAGS -#sed -i "/RELEASE_FLAGS/s/=/+=/" Makefile - RELEASE_FLAGS+="$SLKCFLAGS" \ make @@ -83,9 +82,9 @@ install -D -m755 $PRGNAM-build-l $PKG/usr/bin/$PRGNAM-build-l install -D -m755 $PRGNAM-align-s $PKG/usr/bin/$PRGNAM-align-s install -D -m755 $PRGNAM-build-s $PKG/usr/bin/$PRGNAM-build-s install -D -m755 $PRGNAM-build $PKG/usr/bin/$PRGNAM-build -install -D -m755 $PRGNAM-inspect-l $PKG/usr/bin/$PRGNAM-inspect-l -install -D -m755 $PRGNAM-inspect-s $PKG/usr/bin/$PRGNAM-inspect-s -install -D -m755 $PRGNAM-inspect $PKG/usr/bin/$PRGNAM-inspect +install -D -m755 $PRGNAM-inspect-l $PKG/usr/bin/$PRGNAM-inspect-l +install -D -m755 $PRGNAM-inspect-s $PKG/usr/bin/$PRGNAM-inspect-s +install -D -m755 $PRGNAM-inspect $PKG/usr/bin/$PRGNAM-inspect # Copy examples and scripts mkdir -p $PKG/usr/share/$PRGNAM @@ -102,7 +101,7 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION cp -a \ - AUTHORS LICENSE MANUAL NEWS TUTORIAL VERSION doc \ + AUTHORS LICENSE MANUAL NEWS TUTORIAL BOWTIE2_VERSION doc \ $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild @@ -110,4 +109,4 @@ mkdir -p $PKG/install cat $CWD/slack-desc > $PKG/install/slack-desc cd $PKG -/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz} +/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE |