diff options
Diffstat (limited to 'academic/bowtie2-legacy/bowtie2-legacy.SlackBuild')
| -rw-r--r-- | academic/bowtie2-legacy/bowtie2-legacy.SlackBuild | 25 |
1 files changed, 18 insertions, 7 deletions
diff --git a/academic/bowtie2-legacy/bowtie2-legacy.SlackBuild b/academic/bowtie2-legacy/bowtie2-legacy.SlackBuild index db90b9ad1c..262e05cab7 100644 --- a/academic/bowtie2-legacy/bowtie2-legacy.SlackBuild +++ b/academic/bowtie2-legacy/bowtie2-legacy.SlackBuild @@ -1,4 +1,4 @@ -#!/bin/sh +#!/bin/bash # Slackware build script for bowtie2-legacy @@ -22,12 +22,15 @@ # OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. -SRCNAM=bowtie2 -SUFFIX=legacy -PRGNAM=$SRCNAM-$SUFFIX +cd $(dirname $0) ; CWD=$(pwd) + +PRGNAM=bowtie2-legacy VERSION=${VERSION:-2.1.0} -BUILD=${BUILD:-1} +BUILD=${BUILD:-2} TAG=${TAG:-_SBo} +PKGTYPE=${PKGTYPE:-tgz} + +SRCNAM=bowtie2 if [ -z "$ARCH" ]; then case "$( uname -m )" in @@ -37,7 +40,14 @@ if [ -z "$ARCH" ]; then esac fi -CWD=$(pwd) +# If the variable PRINT_PACKAGE_NAME is set, then this script will report what +# the name of the created package would be, and then exit. This information +# could be useful to other scripts. +if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then + echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE" + exit 0 +fi + TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM OUTPUT=${OUTPUT:-/tmp} @@ -71,6 +81,7 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; +sed -i "s,flag > 0,flag != 0," aligner_result.cpp # Use our FLAGS sed -i "/RELEASE_FLAGS/s/=/+=/" Makefile @@ -107,4 +118,4 @@ mkdir -p $PKG/install cat $CWD/slack-desc > $PKG/install/slack-desc cd $PKG -/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz} +/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE |