diff options
Diffstat (limited to 'academic/MetaPhlAn2/MetaPhlAn2.SlackBuild')
| -rw-r--r-- | academic/MetaPhlAn2/MetaPhlAn2.SlackBuild | 47 |
1 files changed, 25 insertions, 22 deletions
diff --git a/academic/MetaPhlAn2/MetaPhlAn2.SlackBuild b/academic/MetaPhlAn2/MetaPhlAn2.SlackBuild index a7755d252a..99d17512b7 100644 --- a/academic/MetaPhlAn2/MetaPhlAn2.SlackBuild +++ b/academic/MetaPhlAn2/MetaPhlAn2.SlackBuild @@ -1,8 +1,8 @@ -#!/bin/sh +#!/bin/bash # Slackware build script for MetaPhlAn2 -# Copyright 2019 Petar Petrov slackalaxy@gmail.com +# Copyright 2019-2021 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -22,44 +22,44 @@ # OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. +cd $(dirname $0) ; CWD=$(pwd) + PRGNAM=MetaPhlAn2 -VERSION=${VERSION:-2.9.15} +VERSION=${VERSION:-20201202_git4e4416} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} +PKGTYPE=${PKGTYPE:-tgz} -SRCNAM=metaphlan2 -AUTHOR=biobakery -COMMIT=8f88d3957418 +COMMIT=4e4416321c75828ac8ea55d36f5a65ebd39058c5 +ARCH=noarch -if [ -z "$ARCH" ]; then - case "$( uname -m )" in - i?86) ARCH=i586 ;; - arm*) ARCH=arm ;; - *) ARCH=$( uname -m ) ;; - esac +# If the variable PRINT_PACKAGE_NAME is set, then this script will report what +# the name of the created package would be, and then exit. This information +# could be useful to other scripts. +if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then + echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE" + exit 0 fi -CWD=$(pwd) + TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM OUTPUT=${OUTPUT:-/tmp} -ARCH=noarch - set -e # Construct the source tarball name. if [ -e $CWD/$COMMIT.tar.gz ]; then TARBALL=${COMMIT} else - TARBALL=${AUTHOR}-${SRCNAM}-${COMMIT} + TARBALL=${PRGNAM}-${COMMIT} fi rm -rf $PKG mkdir -p $TMP $PKG $OUTPUT cd $TMP -rm -rf ${AUTHOR}-${SRCNAM}-${COMMIT} +rm -rf ${PRGNAM}-${COMMIT} tar xvf $CWD/$TARBALL.tar.gz -cd ${AUTHOR}-${SRCNAM}-${COMMIT} +cd ${PRGNAM}-${COMMIT} chown -R root:root . find -L . \ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ @@ -74,13 +74,16 @@ cp -a \ mkdir $PKG/usr/bin cd $PKG/usr/bin -ln -s ../share/$PRGNAM/metaphlan2.py -ln -s ../share/$PRGNAM/strainphlan.py + ln -s ../share/$PRGNAM/metaphlan2.py + ln -s ../share/$PRGNAM/strainphlan.py cd - +mkdir -p $PKG/usr/share/$PRGNAM +cp -a strainphlan_tutorial $PKG/usr/share/$PRGNAM + mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION cp -a \ - README.md changeset.txt license.txt strainphlan_tutorial \ + README.md changeset.txt license.txt \ $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References @@ -89,4 +92,4 @@ mkdir -p $PKG/install cat $CWD/slack-desc > $PKG/install/slack-desc cd $PKG -/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz} +/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE |