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| author |   Matteo Bernardini | 2019-08-18 16:29:50 +0200 |
|---|---|---|
| committer | Matteo Bernardini | 2019-08-18 16:29:50 +0200 |
| commit | e81a89f1b6ccd3da8cffc51b431e0026126e34b9 (patch) | |
| tree | d58abd1dad22c526d4bebefe25d34800370d6392 /academic/ugene/ugene-1.22.0-dont_hardcode_includes.patch | |
| parent | d04189e642ca17186cb9b2b5899fa9c12aceb782 (diff) | |
| download | slackbuilds-5f2831c3d36a91082430233bca817afd27cec528.tar.gz | |
20190818.2 global branch merge.current-20190818.2
Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
Diffstat (limited to 'academic/ugene/ugene-1.22.0-dont_hardcode_includes.patch')
| -rw-r--r-- | academic/ugene/ugene-1.22.0-dont_hardcode_includes.patch | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/academic/ugene/ugene-1.22.0-dont_hardcode_includes.patch b/academic/ugene/ugene-1.22.0-dont_hardcode_includes.patch new file mode 100644 index 0000000000..6bc26e1f19 --- /dev/null +++ b/academic/ugene/ugene-1.22.0-dont_hardcode_includes.patch @@ -0,0 +1,24 @@ +diff -up ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri.dont_hardcode_includes ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri +--- ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri.dont_hardcode_includes 2016-03-31 07:21:56.000000000 -0500 ++++ ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri 2016-06-02 17:49:02.383069490 -0500 +@@ -3,7 +3,7 @@ UGENE_RELATIVE_DESTDIR = '' + + TEMPLATE = lib + CONFIG +=thread debug_and_release staticlib warn_off +-INCLUDEPATH += src src/samtools ../../include /usr/include ++INCLUDEPATH += src src/samtools ../../include + win32 : INCLUDEPATH += src/samtools/win32 + DEFINES+="_FILE_OFFSET_BITS=64" _LARGEFILE64_SOURCE _USE_KNETFILE + win32 : DEFINES += _USE_MATH_DEFINES "inline=__inline" "__func__=__FUNCTION__" "R_OK=4" "atoll=_atoi64" "alloca=_alloca" +diff -up ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri.dont_hardcode_includes ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri +--- ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri.dont_hardcode_includes 2016-03-31 07:22:09.000000000 -0500 ++++ ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri 2016-06-02 20:26:35.265356432 -0500 +@@ -20,7 +20,7 @@ use_bundled_zlib() { + win32 : LIBS += -lwsock32 + + +-INCLUDEPATH += src ../../include /usr/include ++INCLUDEPATH += src ../../include + INCLUDEPATH += ../../libs_3rdparty/samtools/src/samtools + INCLUDEPATH += ../../libs_3rdparty/samtools/src + INCLUDEPATH += ../../libs_3rdparty/samtools/src/samtools/bcftools |