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| author |   Matteo Bernardini | 2020-01-12 12:08:26 +0100 |
|---|---|---|
| committer | Matteo Bernardini | 2020-01-12 12:08:26 +0100 |
| commit | 0c6fe367a7009c5bbabc3071f8cccc77a37859eb (patch) | |
| tree | ac54688f55ad545306ad664b6b58a85e87de6768 /academic/tophat/make_pair.patch | |
| parent | 3066e0530b82d92e7856c44afb715f6fae0a5df0 (diff) | |
| download | slackbuilds-0c6fe367a7009c5bbabc3071f8cccc77a37859eb.tar.gz | |
20200112.1 global branch merge.current-20200112.1
Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
Diffstat (limited to 'academic/tophat/make_pair.patch')
| -rw-r--r-- | academic/tophat/make_pair.patch | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/academic/tophat/make_pair.patch b/academic/tophat/make_pair.patch new file mode 100644 index 0000000000..44b71d1059 --- /dev/null +++ b/academic/tophat/make_pair.patch @@ -0,0 +1,24 @@ +diff -uBw -aur tophat-2.1.1/src/juncs_db.cpp tophat-2.1.1-patched/src/juncs_db.cpp +--- tophat-2.1.1/src/juncs_db.cpp 2016-02-14 19:21:17.354079000 +0100 ++++ tophat-2.1.1-patched/src/juncs_db.cpp 2016-06-02 11:26:34.097425159 +0200 +@@ -338,7 +338,7 @@ + uint32_t left_coord = atoi(scan_left_coord); + uint32_t right_coord = atoi(scan_right_coord); + bool antisense = *orientation == '-'; +- junctions.insert(make_pair<Junction, JunctionStats>(Junction(ref_id, left_coord, right_coord, antisense), JunctionStats())); ++ junctions.insert(make_pair(Junction(ref_id, left_coord, right_coord, antisense), JunctionStats())); + } + } + +diff -uBw -aur tophat-2.1.1/src/tophat_reports.cpp tophat-2.1.1-patched/src/tophat_reports.cpp +--- tophat-2.1.1/src/tophat_reports.cpp 2016-02-23 22:20:44.320710000 +0100 ++++ tophat-2.1.1-patched/src/tophat_reports.cpp 2016-06-02 11:26:22.057239478 +0200 +@@ -2705,7 +2705,7 @@ + junction_stat.gtf_match = true; + junction_stat.accepted = true; + +- gtf_junctions.insert(make_pair<Junction, JunctionStats>(Junction(ref_id, left_coord, right_coord, antisense), junction_stat)); ++ gtf_junctions.insert(make_pair(Junction(ref_id, left_coord, right_coord, antisense), junction_stat)); + } + } + fprintf(stderr, "Loaded %d GFF junctions from %s.\n", (int)(gtf_junctions.size()), gtf_juncs.c_str()); |