diff options
| author |   Petar Petrov | 2022-09-04 14:49:57 +0200 |
|---|---|---|
| committer |   Dave Woodfall | 2022-09-04 14:49:57 +0200 |
| commit | 08e0e1dd1b453f5b299e502cd876a70608db3339 (patch) | |
| tree | 6f43f9f09a76011af71d825c4fc46ea02ca3a530 /academic/PhyML | |
| parent | 895cf023f7f987b535e1df6df0ad09faf22672e1 (diff) | |
| download | slackbuilds-08e0e1dd1b453f5b299e502cd876a70608db3339.tar.gz | |
academic/PhyML: Updated for version 3.3.20220408.
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
Diffstat (limited to 'academic/PhyML')
| -rw-r--r-- | academic/PhyML/PhyML.SlackBuild | 68 | ||||
| -rw-r--r-- | academic/PhyML/PhyML.info | 6 |
2 files changed, 39 insertions, 35 deletions
diff --git a/academic/PhyML/PhyML.SlackBuild b/academic/PhyML/PhyML.SlackBuild index 41e235cda0..351fde6f1f 100644 --- a/academic/PhyML/PhyML.SlackBuild +++ b/academic/PhyML/PhyML.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for PhyML -# Copyright 2011-2021 Petar Petrov slackalaxy@gmail.com +# Copyright 2011-2022 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -27,7 +27,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=PhyML -VERSION=${VERSION:-3.3.20200621} +VERSION=${VERSION:-3.3.20220408} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -123,45 +123,49 @@ sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile CFLAGS="$SLKCFLAGS -mfma" CXXFLAGS="$SLKCFLAGS -mfma" make make install DESTDIR=$PKG -# This is Phyrex -./autogen.sh -./configure \ - --prefix=/usr \ - --libdir=/usr/lib${LIBDIRSUFFIX} \ - --sysconfdir=/etc \ - --localstatedir=/var \ - --mandir=/usr/man \ - --enable-phyrex \ - --docdir=/usr/doc/$PRGNAM-$VERSION \ - --build=$ARCH-slackware-linux - -# Use our CFLAGS +# This is Phyrex but it breaks at the moment + ./autogen.sh + ./configure \ + --prefix=/usr \ + --libdir=/usr/lib${LIBDIRSUFFIX} \ + --sysconfdir=/etc \ + --localstatedir=/var \ + --mandir=/usr/man \ + --enable-phyrex \ + --docdir=/usr/doc/$PRGNAM-$VERSION \ + --build=$ARCH-slackware-linux + + # Use our CFLAGS sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile CFLAGS="$SLKCFLAGS -mfma" CXXFLAGS="$SLKCFLAGS -mfma" make make install DESTDIR=$PKG -# This is PhyTime -./autogen.sh -./configure \ - --prefix=/usr \ - --libdir=/usr/lib${LIBDIRSUFFIX} \ - --sysconfdir=/etc \ - --localstatedir=/var \ - --mandir=/usr/man \ - --enable-phytime \ - --docdir=/usr/doc/$PRGNAM-$VERSION \ - --build=$ARCH-slackware-linux - -# Use our CFLAGS -sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile - -CFLAGS="$SLKCFLAGS -mfma" CXXFLAGS="$SLKCFLAGS -mfma" make -make install DESTDIR=$PKG +# # This is PhyTime +# ./autogen.sh +# ./configure \ +# --prefix=/usr \ +# --libdir=/usr/lib${LIBDIRSUFFIX} \ +# --sysconfdir=/etc \ +# --localstatedir=/var \ +# --mandir=/usr/man \ +# --enable-phytime \ +# --docdir=/usr/doc/$PRGNAM-$VERSION \ +# --build=$ARCH-slackware-linux +# +# # Use our CFLAGS +# sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile +# +# CFLAGS="$SLKCFLAGS -mfma" CXXFLAGS="$SLKCFLAGS -mfma" make +# make install DESTDIR=$PKG find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true +# fix permissions for docs +chmod 0644 doc/*.{pdf,tex,bib} +chmod 0644 doc/fig/*.pdf + # Include some examples mkdir -p $PKG/usr/share/$PRGNAM cp -a examples $PKG/usr/share/$PRGNAM diff --git a/academic/PhyML/PhyML.info b/academic/PhyML/PhyML.info index ec04310e99..9b34384c9f 100644 --- a/academic/PhyML/PhyML.info +++ b/academic/PhyML/PhyML.info @@ -1,8 +1,8 @@ PRGNAM="PhyML" -VERSION="3.3.20200621" +VERSION="3.3.20220408" HOMEPAGE="https://github.com/stephaneguindon/phyml/" -DOWNLOAD="https://github.com/stephaneguindon/phyml/archive/v3.3.20200621/phyml-3.3.20200621.tar.gz" -MD5SUM="12622e111c388bcb16696660033143b5" +DOWNLOAD="https://github.com/stephaneguindon/phyml/archive/v3.3.20220408/phyml-3.3.20220408.tar.gz" +MD5SUM="b35e641af77d7f058cf1ddc73be5e0b7" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="openmpi" |